Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10062 102 9e-17 >seq10062 Length=763049 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||||||||| || ||||| |||| | ||||| |||||||| | || |||| Sbjct 232492 TTAAAAATCAGCATCCAAAGAGAAGACATGCGCATCTTTATTTGACATGACACCACTTTT 232551 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | |||| |||| ||||| || ||||| || || |||| || || ||| Sbjct 232552 CTGATATTCTCCAACTTTTTTCTCGAAGAAGTTTGTTTTACCCTCCAGAGAGATCTGTTC 232611 Query 21247 CATAAAATCAAATGGATTTTC 21267 ||| || ||||| ||||| || Sbjct 232612 CATGAAGTCAAAAGGATTCTC 232632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||| || | ||| || || ||||| || || || || ||||| | ||| Sbjct 235941 ACTATACATTTCAGAGTGGACATTCTCCATTGCTATTTGGAAGCCATAGAAACAACGTGC 236000 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | ||||||||| | |||| || ||| ||||||||| || || ||||| Sbjct 236001 TTCCGTTACTTGAACCTCTTGACTGAATCTTTCTACCAGGTTTTCATTAACGATACCATC 236060 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| ||||||||||| | || || ||||||| | |||| | ||||||| Sbjct 236061 CGAGGCAGCAAAAAATGCAAGTACATGCGAAATAAAATGTTTCTCGTCCGGTTTTAATTT 236120 Query 21946 TTTCCAATCT 21955 || ||||||| Sbjct 236121 TTCCCAATCT 236130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531769480341240