Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq16 105 2e-17 seq105 89.7 1e-12 >seq16 Length=5839711 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || || ||||| || ||||| || ||| ||||| ||||||||||| ||| | || | Sbjct 3537841 GGAGCTTTTGCAATTTATCTGGAACCTTGGCATGCGGATATTTTTGAATTTTTAGACTTG 3537782 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| |||||||| ||| |||| ||||||||||| || || || |||||| || Sbjct 3537781 AAGAAAAACACAGGAAAAGAAGAAGTGCGAGCACGTGATCTCTTTTACGCCCTTTGGATT 3537722 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 |||| | || |||||| | || || Sbjct 3537721 CCTGATGAATTCATGAAGAGAGTTGA 3537696 Score = 96.9 bits (106), Expect = 9e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 364648 TTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGT 364707 || |||| ||| | |||||||| || ||| | | ||| |||||| | ||||| Sbjct 3534222 TTGCAGTACGATATGTGGAATGTTACCCCAACAGATTTGTGGGACTGGGCTGCGCTAAAA 3534163 Query 364708 TCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCT 364767 || || || ||||| || ||||||||| || ||| |||||||| || ||| Sbjct 3534162 CAAAAAATTGCCAAACATGGAGTGCGTAACTCCCTCCTTCTAGCACCCATGCCAACAGCT 3534103 Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827 || ||||| |||||| | || |||||||| | || ||||| | ||||| || | || Sbjct 3534102 TCAACTGCTCAGATCTTAGGCAACAACGAATCTTTTGAACCATACACAAGTAACATCTAC 3534043 Query 364828 TCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 || | ||||| || ||||||||||| | |||| Sbjct 3534042 TCGAGGCGGGTCCTCTCCGGAGAATTCCAGGTA 3534010 Score = 96.9 bits (106), Expect = 9e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| || | ||||||||||| |||||||||| | || ||||| ||| |||||| Sbjct 3536079 GCCCAGCAGTTGTGGTTTGCCATTCTGGATTCGCAAGTAGAAACAGGTGTACCATATATG 3536020 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | || ||| ||||||| || || || | || || || || || Sbjct 3536019 CTCTACAAGGATGCCTGTAACAGCAAGTCAAATCAACAAAATCTAGGAACCATCAAGTGT 3535960 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 |||||| | ||||| || ||||| |||||||| ||| Sbjct 3535959 AGCAACTTGTGTACTGAAATTATAGAATACACGGCT 3535924 >seq105 Length=4822286 Score = 89.7 bits (98), Expect = 1e-12 Identities = 230/341 (67%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 |||||| | || || ||||| || || || ||||| |||| |||||| || || || Sbjct 223965 AGGTGACTTGGGTCCTGTTTATGGCTTCCAGTGGCGTCACTATGGTGCCGAGTATAAGGA 224024 Query 111548 CATG--CACGACTCATATGATTCACAGGGAACTGATCAATT-ACAGAA-TG-TC--ATTG 111600 ||| ||| | | | | ||| || | ||| ||| | | |||| || || | | Sbjct 224025 TATGTTCACAGATTACACCAATCAA--GGCATTGACCAACTGAAAGAAGTGATCGAAACG 224082 Query 111601 ATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATG 111660 ||||||| || |||| | | ||| |||||||| ||| |||| ||||| || | Sbjct 224083 ATCAAATCAA-----ACCCCAATGATCGCCGCATTATAATGTGTGCTTGGAATCCTGTAG 224137 Query 111661 CATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGAC 111719 | |||||||| || || || || || || || ||||||||||| | Sbjct 224138 ACCTTCCTAAAATGGCCCTGCCTCCTTGCCA-CTGCCTTGTTCAGTTTTATGTCGCTAAT 224196 Query 111720 GGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTT 111779 || ||| ||||| | | | || ||| |||||||||| || || |||||||| ||||| Sbjct 224197 GGCGAGCTGTCATGTCTATTATACCAGAGATCTGCTGACATGGGCCTTGGTGTGCCGTTC 224256 Query 111780 AATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | |||||||| | |||||||| | | | |||||||| Sbjct 224257 AATGTAGCAAGTTATTCGCTACTTACATACATGATCGCTCA 224297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303023773745282