Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq20 129 5e-25 seq933 113 4e-20 seq115 102 7e-17 >seq20 Length=9260020 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||||| ||||| | ||||| || || ||||| || ||| | || ||| ||||||| || Sbjct 134242 AAACATCATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGA 134301 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 ||| ||||| || ||| | || || ||| || ||||| |||||||| || || Sbjct 134302 GGCTTCAGACACAATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCC 134361 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || |||||| | |||| | || |||||| || | ||||||| |||| || ||| Sbjct 134362 TGACCAACAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGA 134421 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| |||||||| ||||| |||| || || | |||||||||||||| Sbjct 134422 CTACAACATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGG 134475 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | |||||| | ||||| || || Sbjct 134477 ATGCAAATTTTTGTGAAGACGCTGACTGGCAAAACAATTACCCTGGAAGTTGAAGCATCA 134536 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || ||| || ||||| ||||| || || || || ||| Sbjct 134537 GACACAATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 134596 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| | ||||||| |||| || ||| || ||| Sbjct 134597 CAGCGTTTGATCTTCGCCGGAAAGCAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134656 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| |||||| |||| || || | |||||||||||||| Sbjct 134657 ATCCAGAAAGAGTCTACACTTCACTTGGTCCTGAGATTGAGAGGAGG 134703 >seq933 Length=6104033 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || || | ||||| ||||| | Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||| || ||| | ||||||| | | | | | ||| || ||| Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593720 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || ||||| | || ||| | |||||||||||| | Sbjct 5593034 ATGCAAATTTTTGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAAGTCGAGGCCTCC 5592975 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 5592974 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5592915 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||||| ||||||| | | | | | ||||||||| Sbjct 5592914 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACCCTTTCTGATTATAAC 5592855 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || |||||||| | |||||||| Sbjct 5592854 ATCCAGAAGGAATCTACTCTCCATTTAGT 5592826 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | |||||||| | || ||| | ||||| |||||| | Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5591775 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||| | ||||||| | | | | | ||||| ||| Sbjct 5591774 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 5591715 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5591714 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5591668 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | || || || ||| Sbjct 5593490 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTAGAAGCCTCT 5593431 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 5593430 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593371 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||| || ||| | ||||||| | | | | | ||| || ||| Sbjct 5593370 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593311 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5593310 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593264 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | ||||| |||||| | Sbjct 5593262 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5593203 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || |||||| ||||| ||||| || ||||| || || Sbjct 5593202 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593143 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||| | ||||||| | | | | | || || ||| Sbjct 5593142 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593083 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||| || | |||||||| Sbjct 5593082 ATTCAAAAAGAATCAACTCTCCATTTAGT 5593054 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| | || ||| | ||||| |||||| | Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || |||||| ||||| ||||| || ||||| || || Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593599 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||| | ||||||| | | | | | || || ||| Sbjct 5593598 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593539 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5593538 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || |||||||| | || || || ||| |||| ||||| | || ||| | || || || Sbjct 5594180 AAAAAAATGCAGATCTTCGTCAAGACACTAACCGGAAAGACTATCACCTTGGAGGTAGAA 5594121 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 ||| |||||||||||| | ||||| ||||| ||||| ||||| || ||||| Sbjct 5594120 GCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCA 5594061 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 || || || | || || | || || |||||| | ||||||| | | | | || Sbjct 5594060 GACCAGCAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGAC 5594001 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || |||||||| |||||||||| Sbjct 5594000 TACAACATCCAGAAGGAATCTACTCTTCATTTAGT 5593966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | |||||| | ||||| ||||| Sbjct 5592806 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATTACCTTGGAAGTTGAGGCTTCT 5592747 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| ||||| || ||||| || || Sbjct 5592746 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592687 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||||| ||||||| | | | | ||||| ||| Sbjct 5592686 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAAC 5592627 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || |||||||| | |||||||| Sbjct 5592626 ATCCAGAAGGAATCTACTCTCCATTTAGT 5592598 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | || ||| | ||||| ||||| Sbjct 5592578 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTTGAGGCTTCT 5592519 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| ||||| || ||||| || || Sbjct 5592518 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592459 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||||| ||||||| | | | | ||||| ||| Sbjct 5592458 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAAC 5592399 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || |||||||| | |||||||| Sbjct 5592398 ATCCAGAAGGAATCTACTCTCCATTTAGT 5592370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | || || || || Sbjct 5591666 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAGGTAGAAGCTTCT 5591607 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 5591606 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5591547 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || || ||| | ||||||| | | | | | ||| || ||| Sbjct 5591546 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCCTATCCGACTACAAC 5591487 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||| || | || ||||| || Sbjct 5591486 ATTCAAAAAGAATCCACTCTCCACTTAGTTTT 5591455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | ||||| ||||| | Sbjct 5592122 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAAGTTGAGGCTTCC 5592063 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| ||||| || ||||| || || Sbjct 5592062 GACACCATCGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592003 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || |||||| | ||||||| | | | | || || ||| Sbjct 5592002 CAGCGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTACAAC 5591943 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || |||||||| | |||||||| Sbjct 5591942 ATCCAGAAGGAATCTACTCTCCATTTAGT 5591914 >seq115 Length=3414097 Score = 102 bits (112), Expect = 7e-17 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| ||| | || || | ||||| ||||| Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| || ||| |||||||||||||| ||||| || || Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 |||||| |||||| | ||||| ||| | |||||| | | | || ||| ||||| | Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCA--GATTACA 442559 Query 24169 ACATTCAAAAAG 24180 ||||||| |||| Sbjct 442558 ACATTCAGAAAG 442547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429832507821405