Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq933 107 2e-18 seq20 107 2e-18 seq115 86.0 5e-12 >seq933 Length=6104033 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || ||||| || |||||||| ||| | ||| ||| || | Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || || || ||| || || ||||| |||| || ||| Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593599 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | || || |||||||||||||||| | ||| | | || || ||| Sbjct 5593598 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593539 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || ||| | ||| | || | ||| |||| || || Sbjct 5593538 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593492 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || ||||| ||||| ||||| ||| | ||| ||| || | Sbjct 5593262 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5593203 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || || || ||| || || ||||| |||| || ||| Sbjct 5593202 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593143 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | || || |||||||||||||||| | ||| | | || || ||| Sbjct 5593142 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593083 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 5593082 ATTCAAAAAGAATCAACTCTCCAT 5593059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || ||||| ||||| ||||| || | ||| ||| | | Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || || || || || || ||||| |||| || ||| Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | || || |||||||||||||||| | ||| | |||| || ||| Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || ||| | ||| | || | ||| |||| || || Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593720 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || || || ||||| ||||| ||| | ||| ||| || | Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || || || || ||||| |||| || ||| Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5591775 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | || || |||||||| ||||||| | ||| | | ||||| ||| Sbjct 5591774 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 5591715 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || ||| | ||| | || | ||| |||| || || Sbjct 5591714 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5591668 >seq20 Length=9260020 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || |||||||| ||| ||||| ||| | Sbjct 134249 ATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGAGGCTTCA 134308 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| || || |||||| | ||| ||| || Sbjct 134309 GACACAATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAA 134368 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | || | || |||||||| |||||||||| | ||| | |||| || ||| Sbjct 134369 CAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134428 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||||||||| | || |||| |||||||| ||||||| Sbjct 134429 ATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGG 134475 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || ||||| || || ||||| |||||| | ||| || | Sbjct 134477 ATGCAAATTTTTGTGAAGACGCTGACTGGCAAAACAATTACCCTGGAAGTTGAAGCATCA 134536 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| || || ||||| | ||| ||| || Sbjct 134537 GACACAATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 134596 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | || | || || || || |||||||||| | ||| | |||| || ||| Sbjct 134597 CAGCGTTTGATCTTCGCCGGAAAGCAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134656 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||||||||| | || |||| |||||||| ||||||| Sbjct 134657 ATCCAGAAAGAGTCTACACTTCACTTGGTCCTGAGATTGAGAGGAGG 134703 >seq115 Length=3414097 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| | || || ||||| || || | ||| ||| | Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| | | | | || ||| |||||| || ||||||||| | || ||| ||| Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| ||| ||||||||||| ||||||| || | | ||||| ||| Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAAC 442557 Query 115466 ATTCAAAAAG 115475 ||||| |||| Sbjct 442556 ATTCAGAAAG 442547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425241613186120