Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq491 156 3e-33 seq2983 122 6e-23 seq20 122 6e-23 seq12261 95.1 8e-15 seq933 93.3 3e-14 >seq491 Length=1868248 Score = 156 bits (172), Expect = 3e-33 Identities = 206/284 (73%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| || || || || || || | || || || ||||| || ||| ||||||||| Sbjct 876715 CCGACAAAGTACTTTGGCTGTGAGTTGGGAGCGCAAACGCAATTCGATTTCAAAAACGAT 876656 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || ||||| || || || || ||| | | ||||||| || || || || || || || Sbjct 876655 CGATTCATTGTAAATGGTTCTCATGAGGCCTCCAAGCTTCAAGATTTGCTCGATGGATTC 876596 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCT 6500 |||||||||||||| ||||||| |||||||||||||| || || || || | ||| ||| Sbjct 876595 ATTCGCAAGTTTGTTCTGTGTCCTGAATGCGATAACCCAGAAACGGACCTCAATGTCTCT 876536 Query 6501 ACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGAT 6560 ||||| | || | |||| |||| |||||||| || || || ||||| | | || Sbjct 876535 ACCAAACGCAATATCATCAATCAGTCTTGCAAAGCTTGTGGGTATCATGGTTTGATCGA- 876477 Query 6561 TTATCA--CACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 | || || || |||| || ||||| |||||||||||||| Sbjct 876476 -GAGCAATCATAAGCTCATAACTTTCATCTTGAAGAATCCTCCA 876434 Score = 140 bits (154), Expect = 2e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| ||| | ||||| ||||| |||||| | || || || ||||| ||||| |||||| Sbjct 878523 ATGGGTACCGTCAACGTCAATCGAAATGTGTCCGATGCCTTTTACCGTTACAAGATGCCG 878464 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| || |||||||||||||| ||||| ||||| || ||||| ||||||||||||||| Sbjct 878463 CGCCTCATGGCCAAGGTCGAGGGAAAGGGTAACGGCATCAAAACTGTCATTGTCAACATG 878404 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 |||| ||||| || || || || || || || || Sbjct 878403 GCTGATGTCGCAAAAGCTCTTGGTCGTCCAGCAAC 878369 >seq2983 Length=3065 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||| ||||||||| |||||||||||||| || |||||||| Sbjct 733 AAGCCCGTTCCCTTGGCTGGGGTTTCGCTGGATAGTAGATAGGGACAGAGGGAATCTCGT 792 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||| |||||||| Sbjct 793 TGATCCATTCATGCGCGTCACTAATTGGATGACGA 827 >seq20 Length=9260020 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | || ||||| ||||| || ||| ||||| || ||||| || | Sbjct 134477 TACCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGG 134418 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | | || ||||| ||||| ||||| || || | || ||||| || | || Sbjct 134417 AGAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGG 134358 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| |||||| ||||||||||| | || ||| | |||| Sbjct 134357 GAATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAA 134298 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| | || || ||||| || || ||||| || || || ||||||||| Sbjct 134297 CTTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCATG 134248 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || ||||| || ||||| || |||| | | | | || || || || || || ||||| Sbjct 134895 TCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAG 134836 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | || ||||| || | ||| | |||||| |||||| ||||| ||||| || Sbjct 134835 ATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTT 134776 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||| ||| ||||||||||| || || ||||| || || | |||||| || Sbjct 134775 TCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACA 134716 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 134715 AAGATCTGCAT 134705 >seq12261 Length=536 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| || ||| ||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 265 CTCTCTCTGCAGAGTCCTTTTCAACTTTCCCGAACGGTACTTGTCCTCTATCGGTCTCGC 324 Query 20007 GGTAATATTTAGCCTTA 20023 || || |||||||||| Sbjct 325 GGCGATGTTTAGCCTTA 341 >seq933 Length=6104033 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || ||||| ||||| ||||| || || |||||||||| Sbjct 5592578 TACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAG 5592637 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | |||||| || || || || || ||||| || || | | Sbjct 5592638 AAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5592697 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || || ||| ||||||| || || || | |||| Sbjct 5592698 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAA 5592757 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || || | || || ||||| || ||||| Sbjct 5592758 CTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || ||||| ||||| ||||| || || |||||||||| Sbjct 5592350 TACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAG 5592409 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | |||||| || || || || || ||||| || || | | Sbjct 5592410 AAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5592469 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || || ||| ||||||| || || || | |||| Sbjct 5592470 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAA 5592529 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | || || ||||| || ||||| Sbjct 5592530 CTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||||||||| || |||||||| |||||||| || || || | || || Sbjct 5591686 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCTTCC 5591745 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| || || || || || ||||| || || | |||| ||||| ||||| Sbjct 5591746 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5591805 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||||| | ||||| |||||||| || || || || || Sbjct 5591806 ATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTT 5591865 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| || ||||| Sbjct 5591866 CCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||||||||| || |||||||| ||||| || || || || | || ||| Sbjct 5593282 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 5593341 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| ||||| || || || ||||| || || | |||| ||||| ||||| Sbjct 5593342 AATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5593401 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||||| || || || ||| || || || || || || || Sbjct 5593402 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTCTTT 5593461 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| || ||||| Sbjct 5593462 CCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||||||||| || |||||||| ||||| || || || || | || ||| Sbjct 5593510 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTCT 5593569 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| || || || || || ||||| || || | |||| ||||| ||||| | Sbjct 5593570 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 5593629 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | | ||||| |||||||| || || || ||||| Sbjct 5593630 ATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTTC 5593689 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || || || || ||||| Sbjct 5593690 CCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||||||||| || |||||||| ||||| || || || || | || ||| Sbjct 5593738 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 5593797 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| ||||| || || || ||||| || || | |||| ||||| ||||| Sbjct 5593798 AATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5593857 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | || || || | |||||||| || || || || || Sbjct 5593858 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTTT 5593917 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || || || || ||||| Sbjct 5593918 CCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || ||||||||||| ||||| || || ||||| || | Sbjct 5593946 TACCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTG 5594005 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || |||||||| || || || || || || ||||| || || | | Sbjct 5594006 ATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5594065 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || || ||| ||||||| || || || ||| | Sbjct 5594066 GGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTA 5594125 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 | || || || ||||| || || || | || || ||||| |||||||| |||| Sbjct 5594126 CCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTTTT 5594179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334866573080081