Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20 158 1e-33 seq115 136 3e-27 seq933 132 4e-26 >seq20 Length=9260020 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || || ||| ||||||| ||||||| ||| | || Sbjct 134249 ATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGAGGCTTCA 134308 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| ||||||| ||||| ||||| ||||| ||||||||| Sbjct 134309 GACACAATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAA 134368 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| |||||||||| | ||| | ||| ||||| Sbjct 134369 CAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134428 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| || || || || || || || || | |||||||| Sbjct 134429 ATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGG 134475 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || ||| | || || | ||||| || | || Sbjct 134477 ATGCAAATTTTTGTGAAGACGCTGACTGGCAAAACAATTACCCTGGAAGTTGAAGCATCA 134536 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||||||| ||||| ||||| ||||| ||||||||| Sbjct 134537 GACACAATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 134596 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || |||||||||| | ||| | ||| ||||| Sbjct 134597 CAGCGTTTGATCTTCGCCGGAAAGCAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134656 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || || || || || | |||||||| Sbjct 134657 ATCCAGAAAGAGTCTACACTTCACTTGGTCCTGAGATTGAGAGGAGG 134703 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| ||||||| | ||||| || | || Sbjct 134705 ATGCAGATCTTTGTCAAAACCCTAACAGGCAAAACCATCACTCTAGAAGTTGAAGCCTCA 134764 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| |||||| ||||| ||||| ||||| || |||||| Sbjct 134765 GACACTATTGAAAACGTGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAA 134824 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || || ||||||| | ||| || ||| ||||| Sbjct 134825 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACTCTGTCCGACTACAAC 134884 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || ||| | || || Sbjct 134885 ATCCAAAAAGAATCGACCCTCCATCTTGTCCT 134916 >seq115 Length=3414097 Score = 136 bits (150), Expect = 3e-27 Identities = 149/194 (77%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || ||| | ||||| | ||||| ||| | || Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||||||| ||| ||||||||||| ||||| ||||| Sbjct 442676 GACACTATCGAAAATGTCAA--AAGCAAAAT-TCAA-GACAAAGAAGGCATTCCTCCTGA 442621 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | |||||||| ||||||||||| ||||||| ||||| | ||||| Sbjct 442620 CCAGCAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTA 442561 Query 25175 CAATATTCAAAAAG 25188 ||| ||||| |||| Sbjct 442560 CAACATTCAGAAAG 442547 >seq933 Length=6104033 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || ||||||| | ||||| ||| | || Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||||||||||||| ||||| | ||| ||||| Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||||||| || || |||||||| || || || Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACT 5593729 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| | || || || | ||| Sbjct 5593490 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTAGAAGCCTCT 5593431 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 5593430 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593371 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||||||||||||| ||||| | ||| ||||| Sbjct 5593370 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593311 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||||||| || || |||||||| || || || Sbjct 5593310 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACT 5593273 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || ||| ||||||| | ||||| ||| | ||| Sbjct 5592350 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTAGAGGCCTCT 5592291 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 5592290 GATACTATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5592231 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || ||||||||||||| |||||| | || ||||| Sbjct 5592230 CAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTACAAC 5592171 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || ||||| || || |||||||| || || || Sbjct 5592170 ATCCAGAAGGAATCTACTCTCCATTTAGTTCTCAGACT 5592133 Score = 118 bits (130), Expect = 9e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| ||||||| | ||||| ||| | || Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | || | ||| ||||| ||||| || || || ||||| Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAA-GACAAGGAAGGTATCCCTCCAGACCA 5593600 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||||||||||||| ||||| | || ||||| Sbjct 5593599 GCAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAA 5593540 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||||||| || || |||||||| || || || Sbjct 5593539 CATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACT 5593501 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| | ||||| ||| | || Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5591775 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || |||||||| ||||||| ||||| | |||||||| Sbjct 5591774 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 5591715 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||||||| || || |||||||| || || || Sbjct 5591714 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACT 5591677 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | ||||| | || || || | ||| Sbjct 5591666 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAGGTAGAAGCTTCT 5591607 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 5591606 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5591547 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || |||||||| ||||||| ||||| | ||| ||||| Sbjct 5591546 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCCTATCCGACTACAAC 5591487 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| || || ||||| Sbjct 5591486 ATTCAAAAAGAATCCACTCTCCACTTAGT 5591458 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || ||||||| | ||||| ||| | || Sbjct 5593262 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5593203 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | || | ||| ||||| ||||| || || || ||||| Sbjct 5593202 GATACCATTGAAAATGTTAAGGCTAAGATTCAA-GACAAGGAAGGTATCCCTCCAGACCA 5593144 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||||||||||||| ||||| | || ||||| Sbjct 5593143 GCAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAA 5593084 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || || |||||||| || Sbjct 5593083 CATTCAAAAAGAATCAACTCTCCATTTAGTTCT 5593051 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | ||||| | ||||| ||| | || Sbjct 5592122 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAAGTTGAGGCTTCC 5592063 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 5592062 GACACCATCGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592003 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || ||||||||||||| |||||| | || ||||| Sbjct 5592002 CAGCGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTACAAC 5591943 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || |||||||| || Sbjct 5591942 ATCCAGAAGGAATCTACTCTCCATTTAGTTCT 5591911 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || ||||| | ||||| || | ||||| | || || || | Sbjct 5594178 AAAAATGCAGATCTTCGTCAAGACACTAACCGGAAAGACTATCACCTTGGAGGTAGAAGC 5594119 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| |||||| | ||| || ||| ||||| ||||| || || || || Sbjct 5594118 CTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGA 5594059 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || || || ||||||||||||| |||||| | || || Sbjct 5594058 CCAGCAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTA 5593999 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || |||||||| || Sbjct 5593998 CAACATCCAGAAGGAATCTACTCTTCATTTAGTTCT 5593963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433223691315065