Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10062 176 5e-39 seq19745 132 5e-26 seq19708 123 3e-23 seq2091 118 1e-21 seq933 118 1e-21 seq19730 116 4e-21 seq9708 114 1e-20 >seq10062 Length=763049 Score = 176 bits (194), Expect = 5e-39 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| ||||| || ||||| | | | |||||||||||| ||||||||||||||||| Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||||| || |||||||| | |||||||| | || || |||||| ||||| || Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| || |||||||| || |||||||| || || |||||||| || | || |||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 |||||||||||| || ||| | || |||||||| | ||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATCTGCAAGATC 236138 Score = 134 bits (148), Expect = 2e-26 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| ||||| || || | ||||||||||| || | || || | || || | ||||| Sbjct 235001 CTTCATCTCGAGAGATTAGTTCATTGCTGAAAGTGAGGCCAGGCATCAAACCCCTTTTCT 235060 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||| || ||||| || ||||| ||||| || || || |||||||| |||||||||| Sbjct 235061 TCAGCCAGAAAATTGAGGCGAAACTGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAATG 235120 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCG 93292 | | | |||||||| || ||| | || | | || ||||||||| | ||||| || Sbjct 235121 CAATCACTCGTTCGGCGAAGCTTGATGCATCATCAGC-GATCCATTTCATGGCCCAGTCT 235179 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347 ||||| |||| | |||||| | |||||| || || || || | ||| |||||| Sbjct 235180 GCTTTCCTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAAGTA--CTCGCT 235232 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || || || |||||||| ||||||| ||||| ||||| ||||| |||||||| | | Sbjct 236780 TTGGATAGGTCTACTTCTTCAGCAGTCCAGAACGAGGCTTCAGCTTTCTTGTACATTTGC 236839 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || ||||| ||| | | ||| || || || || || | | ||||| ||||| || | Sbjct 236840 CAGATGTCATGAAACTCAATAGGGAAAATAACGAATCTTCTGGGGTTGTCTTTGAGCAGA 236899 Query 93701 GGCTCTAGTTGTGGGTCAAACA 93722 || |||| ||||||||||| Sbjct 236900 GGTTCTATGGATGGGTCAAACA 236921 >seq19745 Length=5389341 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 2420856 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 2420915 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 2420916 GTGGGTTCGAACCCCACACCTGACAAA 2420942 >seq19708 Length=1175218 Score = 123 bits (136), Expect = 3e-23 Identities = 86/95 (91%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 |||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 843460 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAGTGTGAGCG 843401 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||||||||||||||||||||| ||||||| || Sbjct 843400 TGGGTTCGAACCCCACACCTGACACAATTATTTTT 843366 >seq2091 Length=5430542 Score = 118 bits (130), Expect = 1e-21 Identities = 90/104 (87%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 |||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 3331325 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAGTGTGAGCG 3331266 Query 126324 TGGGTTCGAACCCCACACCTGACA--AATTATTATTGGAATTTT 126365 |||||||||||||||||||||||| |||| || | | ||||| Sbjct 3331265 TGGGTTCGAACCCCACACCTGACAGGAATTTTTTGTTGCATTTT 3331222 >seq933 Length=6104033 Score = 118 bits (130), Expect = 1e-21 Identities = 78/85 (92%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 |||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 5800245 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAGTGTGAGCG 5800304 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 5800305 TGGGTTCGAACCCCACACCTGACAA 5800329 >seq19730 Length=3781080 Score = 116 bits (128), Expect = 4e-21 Identities = 77/84 (92%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCGT 126324 ||||||||||||||| |||||||||||||||||||||| |||||||| | | |||||| Sbjct 498317 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGATGTGAGCGT 498258 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||| Sbjct 498257 GGGTTCGAACCCCACACCTGACAA 498234 >seq9708 Length=1409392 Score = 114 bits (126), Expect = 1e-20 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCGT 126324 ||||||||||||||| |||||||||||||||||||||| |||||||| | | |||||| Sbjct 497233 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAGTGTGAGCGT 497174 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||| Sbjct 497173 GGGTTCGAACCCCACACCTGACA 497151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556723318029240