Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20 149 1e-30 seq933 132 1e-25 >seq20 Length=9260020 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || ||||||| ||| || | ||| |||||||| ||||| || |||||| Sbjct 134439 TCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAG 134380 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| | || || ||||| || ||||||||||| || ||||| || Sbjct 134379 ATCAAACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTC 134320 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || |||||||| ||||| || ||||| || | |||||||| Sbjct 134319 TCAATTGTGTCTGAAGCCTCAACTTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACA 134260 Query 288463 AATATCTGCATTATGTT 288479 || |||||||| ||||| Sbjct 134259 AAAATCTGCATGATGTT 134243 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||||| || || | ||| ||||| || || || || || || Sbjct 134896 TTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAA 134837 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||||||| |||||| || ||||| || ||||||||||| |||||||| Sbjct 134836 GATCAAACGCTGTTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCAC 134780 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| || | ||| ||||| || ||||| || || || || || || || Sbjct 134779 GTTTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTT 134720 Query 288459 GACGAATATCTGCAT 288473 ||| || |||||||| Sbjct 134719 GACAAAGATCTGCAT 134705 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| ||| || | ||| |||||||| || ||||| |||||| Sbjct 134667 TCTTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAG 134608 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| | || |||||||| || ||||||||||| || || || || Sbjct 134607 ATCAAACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTC 134548 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| || || || || || || ||||| ||||| || Sbjct 134547 TCAATTGTGTCTGATGCTTCAACTTCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACA 134488 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 134487 AAAATTTGCAT 134477 >seq933 Length=6104033 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||||| || ||||||||| || || ||||||| Sbjct 5593264 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGAT 5593323 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || |||||||||||||| || |||||||| ||||| || || ||| Sbjct 5593324 AAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTG---GTCTGGA 5593380 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || ||||| || || || || || || || | || | |||| Sbjct 5593381 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 5593440 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 5593441 ACCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||||| || ||||||||| || || ||||||| Sbjct 5593720 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGAT 5593779 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || |||||||||||||| || |||||||| ||||| || || ||| Sbjct 5593780 AAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTG---GTCTGGA 5593836 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || ||||| || || || || ||||| || | ||| | || Sbjct 5593837 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCA 5593896 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || || |||||||| || || ||||| Sbjct 5593897 ACTTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||||| || ||| || ||||| || ||||| | Sbjct 5593948 CCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5594007 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||||||||| || || |||||||| ||||| || || ||| Sbjct 5594008 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTG---GTCTGGA 5594064 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || ||||| || || || || || || || | || | |||| Sbjct 5594065 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 5594124 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||| ||||| || ||||||||||| ||||||||| Sbjct 5594125 ACCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCATT 5594175 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||||| || ||||||||| || || ||||| | Sbjct 5593492 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGAT 5593551 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || |||||||||||||| || |||||||| ||||| || || ||| Sbjct 5593552 AAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTG---GTCTGGA 5593608 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || || || || || || || ||||| || | |||| | || Sbjct 5593609 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593668 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || ||||| || || |||||||| || || ||||| Sbjct 5593669 ACTTCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||| | || ||| || ||||| || ||||| | Sbjct 5592124 CCACCACGCAGTCTGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5592183 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||||||| || || |||||||| ||||| || || ||| Sbjct 5592184 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5592243 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || |||| ||| | |||||| Sbjct 5592244 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTACT 5592303 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || |||||||||||||| || ||||| Sbjct 5592304 TCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592350 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||||| || ||||||||| || || || || | Sbjct 5591668 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGAT 5591727 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| |||||||| || |||||||| ||||| || || ||| Sbjct 5591728 AAGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5591787 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | |||| | || ||| Sbjct 5591788 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACT 5591847 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 5591848 TCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||||| || ||||| || ||||| |||||||| || ||||| Sbjct 5591475 TTCTTTTTGAATGTTGTAGTCGGATAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAA 5591534 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || || ||||| ||| ||||| || || ||||| || || || || Sbjct 5591535 GATGAGACGTTGCTGG---TCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGAC 5591591 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || | |||||| || | ||||| ||||| || || || ||||| Sbjct 5591592 ATTCTCGATGGTGTCAGAAGCTTCTACCTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTT 5591651 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 5591652 GACGAAAATTTGCAT 5591666 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| || ||||||||||| || || ||||| Sbjct 5591931 TTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAA 5591990 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| |||||||| || ||| ||||| ||||| || || ||||| || || || || Sbjct 5591991 GATGAGACGCTGCTG---GTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAAC 5592047 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | || ||||| | ||||| ||||| || || || ||||| Sbjct 5592048 ATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTT 5592107 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 5592108 GACGAAAATTTGCAT 5592122 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || ||||||||| || || ||||| | Sbjct 5593036 CCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGAT 5593095 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || |||||||||||||| || |||||||| ||||| || || ||| Sbjct 5593096 AAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTG---GTCTGGA 5593152 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || || || || || || || ||||| || | |||| | || Sbjct 5593153 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593212 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || || |||||||| || || ||||| Sbjct 5593213 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || ||| || ||||| || || || | Sbjct 5592352 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592411 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| | |||||| || |||||||| ||||| || || ||||| Sbjct 5592412 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGG---TCTGGA 5592468 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || ||||| || || || || || || || | || | || Sbjct 5592469 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592528 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || || || |||||||||||||| || ||||| Sbjct 5592529 ACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || ||| || ||||| || || || | Sbjct 5592580 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592639 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| | |||||| || |||||||| ||||| || || ||||| Sbjct 5592640 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGG---TCTGGA 5592696 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || ||||| || || || || || || || | || | || Sbjct 5592697 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592756 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || || |||||||||||||| || ||||| Sbjct 5592757 ACTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179355877026178