Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5939 105 7e-18 seq4538 104 3e-17 seq5367 102 9e-17 seq39 102 9e-17 seq1295 100 3e-16 seq31 100 3e-16 seq2522 98.7 1e-15 seq933 98.7 1e-15 seq16099 96.9 4e-15 seq5321 96.9 4e-15 seq4927 96.9 4e-15 seq99 96.9 4e-15 seq20 91.5 2e-13 >seq5939 Length=1455655 Score = 105 bits (116), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 56977 AACAACAAATTAACGTTTATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCT 57035 ||||| || || || | ||| |||||| || ||| |||| | |||||||||| ||||| Sbjct 389772 AACAATAAGTTGACCTGCATGTAAAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCT 389713 Query 57036 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| ||||| ||||||||||||||||||| Sbjct 389712 CCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 389670 >seq4538 Length=2161205 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 2000091 AAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 2000032 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 2000031 GACCACTATACTACCGAGGA 2000012 >seq5367 Length=1128 Score = 102 bits (112), Expect = 9e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||| |||| | | |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 630 TATTAAAATTGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 689 Query 57054 ATACTCACCACTATACTACCGAGGATTGA 57082 ||||| ||||||||||||||||||| ||| Sbjct 690 ATACTAACCACTATACTACCGAGGACTGA 718 >seq39 Length=1366542 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 35732 AAAAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 35791 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 35792 TGACCACTATACTACCGAGGACTG 35815 >seq1295 Length=1447707 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1125166 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1125225 Query 57067 TACTACCGAGGATTG 57081 ||||||||||||||| Sbjct 1125226 TACTACCGAGGATTG 1125240 >seq31 Length=3932601 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || |||| | | |||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 3726097 ATAAAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3726156 Query 57055 TACTCACCACTATACTACCGAGGATTGA 57082 |||| ||||||||||||||||||| ||| Sbjct 3726157 TACTGACCACTATACTACCGAGGACTGA 3726184 Score = 100 bits (110), Expect = 3e-16 Identities = 81/97 (84%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045 || ||| ||| |||| | | |||| |||| | |||||||||| ||||||||||||||| Sbjct 3733134 TTTACGATTA--AAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGAC 3733077 Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGATTGA 57082 |||||| ||||| ||||||||||||||||||| ||| Sbjct 3733076 AGGCGGGGATACTGACCACTATACTACCGAGGACTGA 3733040 >seq2522 Length=5322025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 56996 TGAAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||| | | |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 962489 TGAAAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 962430 Query 57054 ATACTCACCACTATACTACCGAGGATTG 57081 ||||| ||||||||||||||||||| || Sbjct 962429 ATACTGACCACTATACTACCGAGGACTG 962402 >seq933 Length=6104033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||| |||| | |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 3790217 TATTAAAATAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 3790276 Query 57054 ATACTCACCACTATACTACCGAGGATTGA 57082 ||||| ||||||||||||||||||| ||| Sbjct 3790277 ATACTGACCACTATACTACCGAGGACTGA 3790305 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | ||||| || | || |||| |||||||||||||| Sbjct 5593984 TCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAG 5594043 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | |||||||| ||| || |||| || Sbjct 5594044 ATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 5594103 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | ||| || || | ||||| || || || ||||| ||||| || Sbjct 5594104 TCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACG 5594163 Query 42198 AAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 5594164 AAGATCTGCATTTT 5594177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||||| ||||| || | || || || || ||||||||||| Sbjct 5592388 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAG 5592447 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | |||||||| ||| || || | || Sbjct 5592448 ATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTC 5592507 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || | ||||||||||| || || || ||||| || Sbjct 5592508 TCGATGGTGTCAGAAGCCTCAACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACG 5592567 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 5592568 AAAATTTGCAT 5592578 >seq16099 Length=3019828 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56991 GTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||||| ||| | |||| |||| | |||||||||| |||||||||||||||||||| Sbjct 1724892 GTTTATAAAACGAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 1724833 Query 57051 GACATACTCACCACTATACTACCGAGGATTG 57081 | ||||| ||||||||||||||||||| || Sbjct 1724832 GGGATACTGACCACTATACTACCGAGGACTG 1724802 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56991 GTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||||| ||| | |||| |||| | |||||||||| |||||||||||||||||||| Sbjct 1730320 GTTTATAAAACGAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 1730261 Query 57051 GACATACTCACCACTATACTACCGAGGATTG 57081 | ||||| ||||||||||||||||||| || Sbjct 1730260 GGGATACTGACCACTATACTACCGAGGACTG 1730230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1978592 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1978533 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 1978532 TACTACCGAGGA 1978521 >seq5321 Length=1898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 1302 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1243 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || ||||||||||||||||||| || Sbjct 1242 CTGACCACTATACTACCGAGGACTG 1218 >seq4927 Length=1830680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 1190276 AAAAATCGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1190335 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || ||||||||||||||||||| || Sbjct 1190336 CTTACCACTATACTACCGAGGACTG 1190360 >seq99 Length=1495679 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 539580 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 539639 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || ||||||||||||||||||| || Sbjct 539640 CTGACCACTATACTACCGAGGACTG 539664 >seq20 Length=9260020 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || | || ||||| || | || ||| ||||| || ||||| || | Sbjct 134476 ACCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGA 134417 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || |||| ||| || || ||||| || | ||||| ||||| | || Sbjct 134416 GAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGG 134357 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||||||| || | || | | ||||| | || || Sbjct 134356 AATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAAC 134297 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||| || |||| ||||| ||||| || ||||| Sbjct 134296 TTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || ||||| || | |||||| | | || || | |||||| ||||| || Sbjct 134895 TCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAG 134836 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||| ||||| | || | || ||||||||| |||||| ||| | | Sbjct 134835 ATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTT 134776 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | ||| || || | |||||||||||||| ||||| || || ||| Sbjct 134775 TCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACA 134716 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 134715 AAGATCTGCAT 134705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543078687549840