Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3211 98.7 8e-16 seq27 98.7 8e-16 seq6145 86.0 5e-12 >seq3211 Length=612843 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAA 108524 |||||||| || ||| || |||||||||||| |||||| |||||||| ||||| Sbjct 241018 GTGGGTGCGGGACCACCGGCAGCACCACAAGTACAGCGACACGGACGCCGACCCGCACAA 241077 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 ||||| | | ||||||| ||||| ||||| || ||||||||| | ||| ||||||| Sbjct 241078 CGCCAGCCGCGGGTTCTTCTTCTCCCACGTCGGCTGGCTCATGGTCCGCAAACACCCCGA 241137 Query 108585 CGTGATC 108591 ||| ||| Sbjct 241138 CGTCATC 241144 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAA 108524 |||||||| || ||| || |||||||||||| |||||| |||||||| ||||| Sbjct 260570 GTGGGTGCGGGACCACCGGCAGCACCACAAGTACAGCGACACGGACGCCGACCCGCACAA 260629 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 ||||| | | ||||||| ||||| ||||| || ||||||||| | ||| ||||||| Sbjct 260630 CGCCAGCCGCGGGTTCTTCTTCTCCCACGTCGGCTGGCTCATGGTCCGCAAACACCCCGA 260689 Query 108585 CGTGATC 108591 ||| ||| Sbjct 260690 CGTCATC 260696 >seq27 Length=5630790 Score = 98.7 bits (108), Expect = 8e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || |||||| | ||||||||| | ||| |||| ||||| ||||||||||||||||||| Sbjct 2869513 GACAACAAAATCGTGGCGGCGCTAGCTTTCGGGGAGGGTTGGCACAACTACCACCACGCA 2869454 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||| | |||||||| || |||||| |||| ||| || Sbjct 2869453 TTCCCATGGGACTACAAAGCAGCCGAGCTGGGCAACTAC 2869415 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||| | ||||||||||||||||| || | | ||||||| |||| | || || ||||| Sbjct 2873470 TGGGTCCGAGATCACAGGGTTCACCATAAATTCACTGACACAGACG-CAGATCCCCACAA 2873412 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 | |||| || || |||| ||||| ||| | |||||||||||| ||| ||| || Sbjct 2873411 CTCCAAGAGAGGATTCTTCTTCTCCCACATCGGATGGCTCATGCTGAAGAAGCAC 2873357 >seq6145 Length=2030035 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 |||| || |||||| | || |||||||||||| || ||| || ||||| |||||| Sbjct 1730146 TGGGCGCGGGATCACCGAGTGCACCACAAGTACAGCGAGACGGACGCGGACCCGCACAAC 1730205 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC-CAAGGACCCCGA 108584 ||||| |||| |||| ||||| |||||||| |||||| || || | ||| |||| || Sbjct 1730206 GCCAAGCGGGGCTTCTTCTTCTCCCACGTGGGCTGGCTCCTG-TGTCGCAAACACCCGGA 1730264 Query 108585 CGTGAT 108590 ||| || Sbjct 1730265 CGTCAT 1730270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381680901441144