Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq933 109 5e-19 seq115 91.5 1e-13 seq20 91.5 1e-13 >seq933 Length=6104033 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||||||||| | |||| || |||||||||||||||||| | || || || || Sbjct 5593737 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593796 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||||| |||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 5593797 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593856 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || || | | ||| | |||||||| | ||| || || | || | || || Sbjct 5593857 GATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTT 5593916 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || || |||||||| ||||| Sbjct 5593917 TCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 105 bits (116), Expect = 7e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||| | |||| || |||||||||||||||| || Sbjct 5593036 CCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGT--CTG 5593093 Query 138448 ATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| || || || || | ||||||||| | |||| ||||| || ||||| |||| Sbjct 5593094 ATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5593153 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCC 138564 | |||||||| ||||| ||| | || | |||| | ||| | ||| |||| | ||| Sbjct 5593154 GGATACCTTCCTTGTC-TTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593212 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || ||||| || || || |||||||| ||||| Sbjct 5593213 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 102 bits (112), Expect = 8e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATA--GTACGCGAGTCC 138462 ||||||||| | |||| || |||||||||||||||| || ||| || || || Sbjct 5593509 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGT--CTGATAAGGTGCGGCCATCT 5593566 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||||||||| | |||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 5593567 TCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTC- 5593625 Query 138523 GTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| | || | |||| | ||| | ||| |||| | ||| || || | || | || Sbjct 5593626 TTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGT 5593685 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || |||||||| ||||| Sbjct 5593686 TTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||| | | || ||||| || |||||||| || Sbjct 5592352 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592411 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||||||||| | |||| ||||| || ||||| ||||| Sbjct 5592412 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5592471 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 5592472 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACT 5592531 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||| || || ||||| ||||| Sbjct 5592532 TCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||| | | || ||||| || |||||||| || Sbjct 5592580 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592639 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||||||||| | |||| ||||| || ||||| ||||| Sbjct 5592640 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5592699 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 5592700 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACT 5592759 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||| || || ||||| ||||| Sbjct 5592760 TCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||||||||| | |||| || |||||||||||||||||| | || || || || Sbjct 5593281 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593340 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||||| |||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 5593341 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593400 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || || | | || | |||||| | | || ||||| | || | || || Sbjct 5593401 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTCTT 5593460 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || || ||||| ||||| Sbjct 5593461 TCCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || || | ||||||||||| || | | || || |||||||||||||||||| Sbjct 5591438 AGCCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGG 5591497 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || || || || | ||||||||| | |||| ||||| || ||||| |||| Sbjct 5591498 ATAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5591557 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||| ||||| ||| || || | | || | |||||| | | || | Sbjct 5591558 GGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTA 5591617 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || || ||||| ||||| Sbjct 5591618 CCTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5591666 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATA--GTACGCGAGTCC 138462 ||||||||| | |||| || |||||||||||||| || | ||| || || || Sbjct 5591685 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATC--TGATAAGGTGCGGCCATCT 5591742 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||||||||| | |||| ||||| || ||||||||||| |||||||| ||||| Sbjct 5591743 TCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCT 5591802 Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 ||| || || | | || | ||| |||| | ||| || || | || | || Sbjct 5591803 TGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTC 5591862 Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| || || || || ||||| ||||| Sbjct 5591863 TTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||| | | || ||||| || ||||||||||| Sbjct 5591896 CCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5591955 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||| ||||| | |||| |||||||| ||||| ||||| Sbjct 5591956 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 5592015 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | |||||||| | ||| || Sbjct 5592016 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGCCTCAACT 5592075 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || || ||||| ||||| Sbjct 5592076 TCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5592122 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||| | | || ||||| || ||||| || || Sbjct 5592808 CCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAA 5592867 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||||||||| | |||| ||||| || ||||||||||| Sbjct 5592868 AGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5592927 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 5592928 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 5592987 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || |||||||| ||||| Sbjct 5592988 TCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 >seq115 Length=3414097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 ||||| ||||||||||| | || ||| || ||| || || | |||||| || | | Sbjct 442546 CCTTTCTGAATGTTGTAAT--CTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAA 442603 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT-AAT 138540 | || | | ||| ||||| ||||| || ||||||||||| ||| |||| |||| | Sbjct 442604 AAATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATTTTGCTTTTGACA 442662 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | ||| || || | || | ||||| ||||||| |||||| Sbjct 442663 TTTTCGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTA 442722 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 442723 ACAAAAATCTGCAT 442736 >seq20 Length=9260020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || || || || | | | ||||| ||||| |||||||||||| Sbjct 134475 CCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAG 134416 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||||| |||| |||| | |||||||||||| || || Sbjct 134415 AGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134356 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||||| || | | || | ||||| | | ||| || Sbjct 134355 ATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACT 134296 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | ||||| || || | || || ||||||||||||||| Sbjct 134295 TCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCATG 134248 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || || || || | ||| | || | ||| | | | || || ||||| |||||||||||| Sbjct 134934 CAACCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCG 134875 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || ||| | || || | || || || | | |||| | |||||||||||| || Sbjct 134874 GACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGG 134815 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| |||||| ||| | | ||| | ||||| | | || Sbjct 134814 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCA 134755 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | ||||| || || || ||||| ||||| |||||||| Sbjct 134754 ACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496139879016720