Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq115 132 4e-26 seq933 113 4e-20 seq20 113 4e-20 seq16 109 5e-19 >seq115 Length=3414097 Score = 132 bits (146), Expect = 4e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| ||||| | ||||||| |||||||| || |||||||||||||| Sbjct 442581 ATCTTCCAATTGTTTGCCTGCAAAAATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTT 442640 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| ||||| ||| | ||||| || | ||| ||||| ||||| | Sbjct 442641 GTCTTGAATTTTGCTTTTGACATTTTCGATAGTGTCTGATGCCTCTACTTCAAGAGTGAT 442700 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | |||||| |||||||| ||||| Sbjct 442701 TGTTTTGCCAGTCAAAGTTTTAACAAAAATCTGCAT 442736 >seq933 Length=6104033 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || || | |||| ||| || |||||||| ||||| || || || ||| Sbjct 5593717 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCG 5593776 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || |||||||| || ||| | || | ||||||||||| || Sbjct 5593777 GATAAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGA 5593836 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | ||||||||||| ||| Sbjct 5593837 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCA 5593896 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || || || || |||||||||||||| Sbjct 5593897 ACTTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || || |||||||| ||||| |||||||| | ||| ||| ||| Sbjct 5592826 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAAAGGGTACGGCCATCTTCC 5592885 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || ||| | || | |||||||||||||| || || ||||| || ||||| Sbjct 5592886 AGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5592945 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | ||| ||||| | ||||||||| | || | || || Sbjct 5592946 ATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCCAAGGTGATGGTCTTT 5593005 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||||||||| Sbjct 5593006 CCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || || | |||| ||| || |||||||| ||||| || || ||||| Sbjct 5591665 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCT 5591724 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||||||||| || ||| | || | |||||||||||||| Sbjct 5591725 GATAAGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 5591784 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| || | ||| ||||| | ||| Sbjct 5591785 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCA 5591844 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || || || || || || ||||||||||| Sbjct 5591845 ACTTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | |||| ||| || || |||||||| ||||| || ||||| Sbjct 5592577 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCA 5592636 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| |||||| || ||| | || | ||||||||||| || Sbjct 5592637 GAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5592696 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || || | || | |||||| |||| ||| Sbjct 5592697 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592756 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || ||||| || || ||||||||||| Sbjct 5592757 ACTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || || | |||| ||| || |||||||| ||||| || || || || Sbjct 5593489 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCT 5593548 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || |||||||| || ||| | || | ||||||||||| || Sbjct 5593549 GATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5593608 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||||||| || || | ||| | ||| ||||| | ||| Sbjct 5593609 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593668 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || || || || || |||||||||||||| Sbjct 5593669 ACTTCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | |||| ||| || || |||||||| ||||| || ||||| Sbjct 5592349 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCA 5592408 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| |||||| || ||| | || | ||||||||||| || Sbjct 5592409 GAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5592468 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || || | || | |||||| |||| ||| Sbjct 5592469 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592528 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || || ||||| || || ||||||||||| Sbjct 5592529 ACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | |||| ||| || |||||||| ||||| || || || || Sbjct 5593033 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCT 5593092 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || |||||||| || ||| | || | ||||||||||| || Sbjct 5593093 GATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5593152 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||||||| || || | ||| | ||| ||||| | ||| Sbjct 5593153 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593212 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || || || || || |||||||||||||| Sbjct 5593213 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| |||| || || || ||||| ||||| || || || ||| Sbjct 5591440 CCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGAT 5591499 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||||||||| || ||| | || | ||||||||||| || || Sbjct 5591500 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5591559 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || |||| || | |||||| |||| || || Sbjct 5591560 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTACC 5591619 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || || || || || || || || ||||||||||| Sbjct 5591620 TCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5591666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| || || |||||||| ||||| || || || ||| | | | ||| | Sbjct 5591914 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTC--TGATAGAGTGCGGCCATCTT 5591971 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | ||||| || || ||| | || | || |||||||| || || || ||||| || |||| Sbjct 5591972 CTAATTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCTT 5592031 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || || || | ||| | ||||||||||| ||| ||||| | || | || | Sbjct 5592032 GGATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAGGTGATAGTCT 5592091 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || || ||||||||||| Sbjct 5592092 TTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5592122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || || | |||| ||| || |||||||| ||||| || || || ||| Sbjct 5593261 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCG 5593320 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || |||||||| || ||| | || | ||||||||||| || Sbjct 5593321 GATAAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGA 5593380 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| || | |||||| || | || Sbjct 5593381 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 5593440 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || || || || || || || ||||||||||| Sbjct 5593441 ACCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 >seq20 Length=9260020 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || ||||| || || ||||| |||||||| || || ||| Sbjct 134931 CCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGAC 134872 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| || || || || | ||||| || || ||||| || ||| Sbjct 134871 AGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 134812 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || ||||| ||| | ||| | ||||| || | || ||| Sbjct 134811 ATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAACT 134752 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | |||||||| ||||| ||||| ||||| || ||||| Sbjct 134751 TCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || |||||||| || || ||| || ||| | ||| || || ||| Sbjct 134451 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGT 134392 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || || ||||| || ||||||||||| || || || |||||| Sbjct 134391 TTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTT 134332 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||| |||| ||| |||||||| || | ||||| || ||| Sbjct 134331 GCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACTTCGAGGGTGATGGTTTTCCCTGTT 134272 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || |||||||| ||||| Sbjct 134271 AAGGTCTTGACAAAAATCTGCAT 134249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || || ||||| || || ||| || ||| | ||| || || || Sbjct 134679 TGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGC 134620 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| || || ||||| || ||||| ||||| || || || |||||| Sbjct 134619 TTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATTTTT 134560 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||| || | || ||||| || |||| |||||||| || Sbjct 134559 GCCTTAACATTCTCAATTGTGTCTGATGCTTCAACTTCCAGGGTAATTGTTTTGCCAGTC 134500 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 134499 AGCGTCTTCACAAAAATTTGCAT 134477 >seq16 Length=5839711 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 |||||||||||||| |||||||||| ||| || ||| |||||||||||||| | || Sbjct 3534225 ATTTTGCAGTACGATATGTGGAATGTTACCCCAACAGATTTGTGGGACTGGGCTGCGCTA 3534166 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 |||||| || | | || || |||||||||| || | | || |||||| || Sbjct 3534165 AAACAAAAAATTGCCAAACATGGAGTGCGTAACTCCCTCCTTCTAGCACCCATGCCAACA 3534106 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270 || | |||||||| || ||||| ||||||||||| || || || | ||| Sbjct 3534105 GCTTCAACTGCTCAGATCTTAGGCAACAACGAATCTTTTGAACCATACAC 3534056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451891606059960