Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq20 89.7 4e-13 seq115 84.2 2e-11 >seq20 Length=9260020 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| || || || |||| || | | | |||| ||||| || || || |||| Sbjct 134896 TTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAA 134837 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || |||||||| || || | ||| | |||||| ||||| ||||| ||| | | Sbjct 134836 GATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTT 134777 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | ||||||| | ||| || || | ||| || ||||| || |||| ||||| || Sbjct 134776 TTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGAC 134717 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 134716 AAAGATCTGCAT 134705 >seq115 Length=3414097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 |||| || || || ||||| | | ||| |||| ||||||||||| || |||||| Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGT 39647 | || | |||||| || | || | |||||||||||| | || || || | || | Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTT 442666 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 || || ||||||| || || || | ||| |||||||| || || |||||||| || Sbjct 442667 CGATA--GTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAAC 442724 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 442725 AAAAATCTGCAT 442736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347285982818183