Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20 125 7e-24 seq933 114 1e-20 seq10062 102 8e-17 >seq20 Length=9260020 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || |||||||||||| |||| || ||||| | Sbjct 134249 ATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGAGGCTTCA 134308 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | |||||||| ||||| || || |||||| | |||||| Sbjct 134309 GACACAATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAA 134368 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||||||| | || || | | || ||| |||||||||| Sbjct 134369 CAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134428 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || | || || || ||||| ||| | |||||||| || Sbjct 134429 ATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGG 134475 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || |||||||||||||| | || || || ||| | Sbjct 134705 ATGCAGATCTTTGTCAAAACCCTAACAGGCAAAACCATCACTCTAGAAGTTGAAGCCTCA 134764 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || ||||| | |||| ||||||| ||||| || || |||||| | ||||| Sbjct 134765 GACACTATTGAAAACG-TGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 134823 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || ||||| ||| |||| || | | || || ||||||||| Sbjct 134824 ACAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACTCTGTCCGACTACAA 134883 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| |||| || ||| | || || ||| Sbjct 134884 CATCCAAAAAGAATCGACCCTCCATCTTGTCCTCCGT 134920 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||||| || |||||||| || ||| | || || || || | Sbjct 134477 ATGCAAATTTTTGTGAAGACGCTGACTGGCAAAACAATTACCCTGGAAGTTGAAGCATCA 134536 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | |||||||| ||||| || ||||||||| | |||||| Sbjct 134537 GACACAATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 134596 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || ||| | || || | | || ||| |||||||||| Sbjct 134597 CAGCGTTTGATCTTCGCCGGAAAGCAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134656 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || || ||||| ||| | |||||||| || Sbjct 134657 ATCCAGAAAGAGTCTACACTTCACTTGGTCCTGAGATTGAGAGGAGG 134703 >seq933 Length=6104033 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || |||||| | || || ||||| || Sbjct 5592122 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAAGTTGAGGCTTCC 5592063 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | || |||| ||||| || || || || | ||||| Sbjct 5592062 GACACCATCGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592003 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || || | || || | ||||| || ||||||||| Sbjct 5592002 CAGCGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTACAAC 5591943 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||||| || || ||| Sbjct 5591942 ATCCAGAAGGAATCTACTCTCCATTTAGTTCTCCGT 5591907 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || |||||||||||| | || || ||||| | Sbjct 5592578 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTTGAGGCTTCT 5592519 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || || || | ||||| Sbjct 5592518 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592459 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| ||||| || | || || || || |||||| Sbjct 5592458 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAAC 5592399 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||||| || || ||| Sbjct 5592398 ATCCAGAAGGAATCTACTCTCCATTTAGTTCTCCGT 5592363 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || |||||||| ||| | || || ||||| | Sbjct 5592806 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATTACCTTGGAAGTTGAGGCTTCT 5592747 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || || || | ||||| Sbjct 5592746 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592687 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| ||||| || | || || || || |||||| Sbjct 5592686 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAAC 5592627 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||||| || || ||| Sbjct 5592626 ATCCAGAAGGAATCTACTCTCCATTTAGTTCTCCGT 5592591 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || |||||||||||| | || || |||||| || Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||| | || || | ||||| || || || || | ||||| Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593599 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| | || || | |||||| | ||||||||| Sbjct 5593598 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593539 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || ||||| ||| | || || ||||| || || Sbjct 5593538 ATTCAAAAAGAATCAACTCTTCATTTAGTTCT 5593507 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||||||| | || || |||||| || Sbjct 5593262 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5593203 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||| | || || | ||||| || || || || | ||||| Sbjct 5593202 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593143 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| | || || | |||||| | ||||||||| Sbjct 5593142 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593083 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || || ||||| || || ||| Sbjct 5593082 ATTCAAAAAGAATCAACTCTCCATTTAGTTCTCCGT 5593047 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || |||||||||||| | || || |||||| | Sbjct 5592350 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTAGAGGCCTCT 5592291 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | || |||| ||||| || || || || | ||||| Sbjct 5592290 GATACTATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5592231 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || || || | || || | ||||| || ||||||||| Sbjct 5592230 CAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTACAAC 5592171 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| |||||| | || || ||||| || || Sbjct 5592170 ATCCAGAAGGAATCTACTCTCCATTTAGTTCT 5592139 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || || || ||| | Sbjct 5593490 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTAGAAGCCTCT 5593431 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | ||||| Sbjct 5593430 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593371 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| | || || | |||||| | |||||||||| Sbjct 5593370 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593311 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || ||||| ||| | || || ||||| || || Sbjct 5593310 ATTCAAAAAGAATCAACTCTTCATTTAGTTCT 5593279 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || |||||||| | || || ||||| || Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || || || | ||||| Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| | || || | |||||| | |||||||||| Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || ||||| ||| | || || ||||| || || Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGTTCT 5593735 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || |||||| | || || || || | Sbjct 5591666 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAGGTAGAAGCTTCT 5591607 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | ||||| Sbjct 5591606 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5591547 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| |||| || | |||||||| |||||||||| Sbjct 5591546 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCCTATCCGACTACAAC 5591487 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || || || || |||| Sbjct 5591486 ATTCAAAAAGAATCCACTCTCCACTTAGTTTTGCG 5591452 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 ||||||||||| || ||||| || || || || || || || |||||| | || || || Sbjct 5594180 AAAAAAATGCAGATCTTCGTCAAGACACTAACCGGAAAGACTATCACCTTGGAGGTAGAA 5594121 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| | |||| | | | | | || | || |||| ||||| || || || || | Sbjct 5594120 GCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCA 5594061 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| || || ||||| | ||| || || || | || || | ||||| || ||| Sbjct 5594060 GACCAGCAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGAC 5594001 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||||| | || || ||||| || || ||| Sbjct 5594000 TACAACATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGT 5593959 >seq10062 Length=763049 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 132928 GAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT 132987 || || ||||| ||||||||||| | ||| ||||| | || | ||| || ||||| || Sbjct 235012 GAGATTAGTTCATTGCTGAAAGTGAGGCCAGGCATCAAACCCCTTTTCTTCAGCCAGAAA 235071 Query 132988 ATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || | |||||||||||| || ||||||| || || || || || || || | || || Sbjct 235072 ATTGAGGCGAAACTGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAATGCAATCACTCGT 235131 Query 133048 TCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCT-TT 133106 ||| |||| | | | | | |||||||| || ||||| || | |||| || || Sbjct 235132 TCGGCGAAGCTTGATGCATCATCAGCGATCCATTTCATGGCCCAGTCTG-CTTTCCTCTT 235190 Query 133107 GACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 || || ||||| ||||| ||||| || ||||| Sbjct 235191 TACACAAGGCATTGTTTCAATGGCATTGAACAA 235223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||||||||| ||||| || |||||||| || ||||| || Sbjct 235923 GTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGCTATTTGGAA 235982 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || || || || || || || || || |||||| ||| | || ||||| || Sbjct 235983 GCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTCTACCAGGTT 236042 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| || ||||| || || ||| || ||||| || || || ||| || ||||| Sbjct 236043 TTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAATAAAATGTTT 236102 Query 133347 CTCGT 133351 ||||| Sbjct 236103 CTCGT 236107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500049313587840