Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq933 107 1e-18 seq20 91.5 1e-13 >seq933 Length=6104033 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || ||||| | || |||| ||||| ||||| || || || Sbjct 5592387 TTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAA 5592446 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||||||| | || | || |||||||| ||||| || || | Sbjct 5592447 GATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAAC--A 5592504 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| |||||||| || | ||| ||||||||||| ||||||||||| Sbjct 5592505 TTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTG 5592564 Query 34968 ACAAAGATCTGCATA 34982 || || || |||||| Sbjct 5592565 ACGAAAATTTGCATA 5592579 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || ||||| | || |||| ||||| ||||| || || || Sbjct 5592615 TTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAA 5592674 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||||||| | || | || |||||||| ||||| || || | Sbjct 5592675 GATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAAC--A 5592732 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| |||||||| || | ||| ||||||||||| ||||||||||| Sbjct 5592733 TTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTG 5592792 Query 34968 ACAAAGATCTGCATA 34982 || || || |||||| Sbjct 5592793 ACGAAAATTTGCATA 5592807 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||| || |||||| | || |||| ||||| ||||| || || || Sbjct 5592843 TTCCTTCTGGATGTTATAATCAGAAAGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAA 5592902 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || |||||||| ||||| ||||| | Sbjct 5592903 GATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGAC--A 5592960 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || |||||| || || | ||| ||||| ||||| ||||| ||||| Sbjct 5592961 TTCTCGATGGTATCGGAGGCCTCGACTTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTG 5593020 Query 34968 ACAAAGATCTGCATA 34982 ||||| || |||||| Sbjct 5593021 ACAAAAATTTGCATA 5593035 Score = 105 bits (116), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| ||||| | ||| |||||| |||||||| ||||| || ||| | || |||| Sbjct 5591454 CAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGATAGGGTGCGGCCATC 5591513 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||||| || || || || || |||||||||||| | || | || |||||||| Sbjct 5591514 TTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTC 5591573 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||||| || || || | ||| || || || || | ||| || Sbjct 5591574 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAAGCTTCTACCTCCAAGGTGATA 5591631 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| ||||| || || || |||||| Sbjct 5591632 GTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCATA 5591667 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| |||||||| ||||| || | | | || |||| || | ||||| || || || Sbjct 5593071 TTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAA 5593130 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||||||| | || | || |||||||| |||||| || || Sbjct 5593131 GATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATT 5593190 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || ||||||||| || | ||| ||||| ||||| ||||| ||||| || Sbjct 5593191 TTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 5593250 Query 34970 AAAGATCTGCATA 34982 ||| || |||||| Sbjct 5593251 AAAAATTTGCATA 5593263 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || |||| || |||||| |||||||| ||||| || | | | || |||| || Sbjct 5593509 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTC 5593568 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| || || || || || |||||||||||| | || | || |||||||| Sbjct 5593569 TAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593628 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || | | || | || ||||||||| || | ||| |||||||| Sbjct 5593629 AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTT 5593688 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| ||||| || |||||| Sbjct 5593689 CCCTGTGAGGGTCTTGACAAAAATTTGCATA 5593719 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || |||| || |||||| |||||||| ||||| || | | | || |||| || Sbjct 5593737 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593796 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| ||||| || || || |||||||||||| | || | || |||||||| Sbjct 5593797 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593856 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||||| | | || | || |||||||| || | || ||||| || Sbjct 5593857 GATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTT 5593916 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| ||||| ||||| || |||||| Sbjct 5593917 TCCAGTGAGGGTCTTGACAAAAATTTGCATA 5593947 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || |||| || |||||| |||||||| ||||| || | | | || |||| || Sbjct 5593281 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593340 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| ||||| || || || |||||||||||| | || | || |||||||| Sbjct 5593341 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593400 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | ||| ||| || || || | ||| ||||| Sbjct 5593401 GATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTC 5593458 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| ||||| || || || |||||| Sbjct 5593459 TTTCCTGTGAGGGTCTTGACGAAAATTTGCATA 5593491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || |||| || |||||| |||||||| || || || | | | || |||| || Sbjct 5591685 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCTTC 5591744 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||| || || || || || ||||||||||| | || | || |||||||| Sbjct 5591745 CAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTG 5591804 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | || ||||||||| || | ||| ||||| Sbjct 5591805 GATCTTGGCCTTGAC--ATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTC 5591862 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || || ||||| || || || |||||| Sbjct 5591863 TTTCCAGTAAGGGTCTTGACGAAAATTTGCATA 5591895 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| || | || || || || || Sbjct 5592159 TTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAA 5592218 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || |||||||| ||||| || || | Sbjct 5592219 GATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAAC--A 5592276 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| |||||| || || | ||| ||||||||||| ||||||||||| Sbjct 5592277 TTCTCGATAGTATCAGAGGCCTCTACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTG 5592336 Query 34968 ACAAAGATCTGCATA 34982 || || || |||||| Sbjct 5592337 ACGAAAATTTGCATA 5592351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || |||| || ||| ||||| ||||| ||||| || || | || |||| || Sbjct 5593965 AACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTC 5594024 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | || || || || || || || |||||||||||| | || | || |||||||| Sbjct 5594025 TAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5594084 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | ||| ||| || || || | ||| || || Sbjct 5594085 GATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTC 5594142 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || || ||||| || ||||||||||| || Sbjct 5594143 TTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTT 5594177 >seq20 Length=9260020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| ||||| || || ||| | |||| |||| ||| || || ||||| Sbjct 134896 TTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAA 134837 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || |||||| | || | || |||||||| || || ||| ||| Sbjct 134836 GATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTT 134777 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || ||| ||||| || | || |||||||| || || || || || || Sbjct 134776 TTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGAC 134717 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 134716 AAAGATCTGCATA 134704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324555455721528