Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq115 111 1e-19 seq20 102 6e-17 >seq115 Length=3414097 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||| |||||||| ||||| | || | || ||||| || || || ||||| | Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || ||| || || | |||| ||| || ||||| ||| || ||| ||| Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTT 442666 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| ||||| || || | || || ||||| || ||||||||||| |||| Sbjct 442667 CGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAA 442726 Query 48757 AAATCTGCATCGTGTGTACGTGTA 48780 |||||||||| || ||| |||| Sbjct 442727 AAATCTGCATACTGACTACCTGTA 442750 >seq20 Length=9260020 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||||||| || ||||| || || ||| ||| | || || Sbjct 134457 ACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCT 134398 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| || ||||| || |||| |||||||| || | ||||| ||| |||||||| Sbjct 134397 AACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 134338 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | ||||| ||||| || || | || || ||||| Sbjct 134337 ATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACTTCGAGGGTGATGGTTTTC 134278 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||||||||| Sbjct 134277 CCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || ||||| || || ||| ||| | || ||||||||||| || ||||| Sbjct 134895 TCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAG 134836 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||||| || | ||||| ||| |||||||| || || ||| || Sbjct 134835 ATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTT 134776 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| || || || || | || || ||||| || || | ||||| ||| Sbjct 134775 TCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACA 134716 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 134715 AAGATCTGCAT 134705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380845902486573