Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq20 127 4e-24 seq933 125 1e-23 >seq20 Length=9260020 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||||| || || |||||||| | ||||| | Sbjct 134919 CGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCA 134860 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || ||||| || || | |||||| || || || || ||||| || Sbjct 134859 TCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 134800 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| ||| | ||| |||||| || || | |||||||||||||| || Sbjct 134799 TCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATG 134740 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| |||||||| ||||| ||||| || ||||| Sbjct 134739 GTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 >seq933 Length=6104033 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || || | ||| | || | ||||| ||| || Sbjct 5593710 AATTTGCATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTT 5593769 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| || | ||| ||||||||||| ||||| || || | | || || Sbjct 5593770 GTAGTCGGATAAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTG 5593829 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || |||| || | |||| || || ||||| Sbjct 5593830 GTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGA 5593889 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||| | ||| || || || || || || || || ||||| |||||||| Sbjct 5593890 AGCCTCAACTTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || || | ||| | || | ||||| ||| || Sbjct 5593482 AATTTGCATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTT 5593541 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| || | ||| ||||||||||| || || || || | | || || Sbjct 5593542 GTAGTCTGATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTG 5593601 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || || | || | |||| ||| |||||||| Sbjct 5593602 GTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGA 5593661 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | || || ||||| ||||| || || || ||||| |||||||| Sbjct 5593662 GGCCTCAACTTCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || || | ||| | || | ||||| ||| || Sbjct 5593026 AATTTGCATACCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTT 5593085 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| || | ||| ||||||||||| || || || || | | || || Sbjct 5593086 GTAGTCTGATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTG 5593145 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || || | || | |||| ||| |||||||| Sbjct 5593146 GTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGA 5593205 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | || || || || || || || || || ||||| |||||||| Sbjct 5593206 GGCCTCAACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || || | ||| | || | ||||| ||| || Sbjct 5593254 AATTTGCATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTT 5593313 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||||||| || | ||| ||||||||||| ||||| || || | | || || Sbjct 5593314 GTAGTCGGATAAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTG 5593373 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || |||| || | ||| || || || || Sbjct 5593374 GTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGA 5593433 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || | || || || || ||||| || || || || || |||||||| Sbjct 5593434 GGCTTCTACCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899432286574320