Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq115 116 5e-21 seq10062 96.9 5e-15 seq933 93.3 6e-14 >seq115 Length=3414097 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| |||||||| ||||| || || | ||||| || | || Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || |||| ||||| ||||| ||||||||||| ||||| || || Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || || || | |||||| | || |||||||||| || Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAAC 442557 Query 156003 AT 156004 || Sbjct 442556 AT 442555 >seq10062 Length=763049 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 18412 TTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCT 18471 |||||||| |||| | || ||||||||||| | ||| |||||||||||| || | | Sbjct 235905 TTCTTTGGGATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATT 235964 Query 18472 TTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATA 18531 ||||| ||||| || || | ||| || | | || || | ||||| ||| | Sbjct 235965 CTCCATTGCTATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACT 236024 Query 18532 AAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 ||||||||||||| || |||||||| ||||| || | | || |||||||| | || Sbjct 236025 GAATCTTTCTACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTAC 236084 Query 18592 ATATTTAATGAAATGTTTTTC 18612 || ||| |||||||| || Sbjct 236085 ATGCGAAATAAAATGTTTCTC 236105 >seq933 Length=6104033 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| || | || Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||| || ||||| || ||||| || |||||||| || Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593599 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | || ||||| || | |||||| | | || |||||||| || || Sbjct 5593598 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593539 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||||||||| Sbjct 5593538 ATTCAAAAAGAATCAACTCTTCATTTAGT 5593510 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||| || || || || ||||| || | ||| Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || || || ||||| || ||||| || |||||||| || Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||||| || | |||||| | | || ||||| || || || Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||||||||| Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGT 5593738 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| || || | || ||| | || ||||| ||||| || || || || ||| Sbjct 5594180 AAAAAAATGCAGATCTTCGTCAAGACACTAACCGGAAAGACTATCACCTTGGAGGTAGAA 5594121 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | ||||| | || || || || || || ||||| || ||||| || |||||| Sbjct 5594120 GCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCA 5594061 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || || ||| | | || | || |||||||| | |||||| | | ||| ||||||| Sbjct 5594060 GACCAGCAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGAC 5594001 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || || || | || ||||||||||| Sbjct 5594000 TACAACATCCAGAAGGAATCTACTCTTCATTTAGT 5593966 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | |||||||| || || || || ||||| || | || Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| || ||||| || ||||| || || Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5591775 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | || ||||| || | |||||| | | || ||||||||||| || Sbjct 5591774 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 5591715 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||||||||| Sbjct 5591714 ATTCAAAAAGAATCAACTCTTCATTTAGT 5591686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731691309951600