Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq115 152 1e-31 seq20 123 5e-23 seq933 104 5e-17 >seq115 Length=3414097 Score = 152 bits (168), Expect = 1e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| |||| ||| || |||| ||||||||||| || ||||| || |||||| Sbjct 442555 ATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAATCAATCTC 442614 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || || |||||||| ||||| ||||| |||| ||||| |||| Sbjct 442615 TGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTTCGATAGTG 442674 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | |||||||| ||||| || ||||| ||||| || ||||||| ||| |||||| Sbjct 442675 TCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAAAAATCTGC 442734 Query 192535 AT 192536 || Sbjct 442735 AT 442736 >seq20 Length=9260020 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || | ||| | || | ||||| ||| || || || || Sbjct 134932 ACCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGA 134873 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | |||| ||||| || || ||||||||||| || | |||||| || || || Sbjct 134872 CAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 134813 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || ||||| ||| || || |||| ||||| | ||| || Sbjct 134812 AATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAAC 134753 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||| |||||||| || |||| ||||| | ||| |||||||| Sbjct 134752 TTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 >seq933 Length=6104033 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | |||||||| | ||||| || || ||| ||||||||| Sbjct 5592805 ATACCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCA 5592864 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||||||||| ||||| | | || || || || Sbjct 5592865 GAAAGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 5592924 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | ||| || | || Sbjct 5592925 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCG 5592984 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || || | || || | ||| || ||||| Sbjct 5592985 ACTTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||| | ||| | ||||| || || || || Sbjct 5593033 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCT 5593092 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| || |||||||||||||| ||||| | | || || || || Sbjct 5593093 GATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5593152 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || ||||| || | ||| || | || Sbjct 5593153 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593212 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || ||||| | || || | ||| || ||||| Sbjct 5593213 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 96.9 bits (106), Expect = 7e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||| | ||||| || || ||| || || || Sbjct 5593945 ATACCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCT 5594004 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || |||| || ||||| |||||||| ||||| | | || || || || Sbjct 5594005 GATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5594064 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || || | |||| Sbjct 5594065 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 5594124 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || | || || || || || |||| ||| || | || ||||||||||| || Sbjct 5594125 ACCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTTTTT 5594180 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||| | ||||| || || ||| || |||||| Sbjct 5592577 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCA 5592636 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||||||||| ||||| | | || || || || Sbjct 5592637 GAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5592696 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || || | || Sbjct 5592697 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592756 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||| || || | || || | || || ||||| Sbjct 5592757 ACTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || | | |||||||| | ||| | ||||| || || ||||| Sbjct 5591665 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCT 5591724 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||||||||||||||| ||||| | | || || || || Sbjct 5591725 GATAAGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 5591784 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | ||| || | || Sbjct 5591785 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCA 5591844 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || ||||| | || || | || || ||||| Sbjct 5591845 ACTTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||| | ||||| || || ||| || |||||| Sbjct 5592349 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCA 5592408 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||||||||| ||||| | | || || || || Sbjct 5592409 GAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5592468 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || || | || Sbjct 5592469 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592528 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| || || | || || | || || ||||| Sbjct 5592529 ACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || | | |||||||| | ||| | ||||| || || || || Sbjct 5593489 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCT 5593548 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| || |||||||||||||| ||||| | | || || || || Sbjct 5593549 GATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5593608 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || ||||| || | ||| || | || Sbjct 5593609 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593668 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| || || | || || | ||| || ||||| Sbjct 5593669 ACTTCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984230867798850