Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq115 154 3e-32 seq20 113 8e-20 seq933 104 4e-17 seq10062 86.0 1e-11 >seq115 Length=3414097 Score = 154 bits (170), Expect = 3e-32 Identities = 144/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || |||||||||| | || | || ||||||||||| || |||||||| ||||| Sbjct 442554 AATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAATCAATCT 442613 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| |||||||| || || |||||||| ||||| ||||| |||| ||||| ||||| Sbjct 442614 CTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTTCGATAGT 442673 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | |||||||| ||||| || ||||| ||||| || ||||||| || ||||| Sbjct 442674 GTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAAAAATCTG 442733 Query 172067 CAT 172069 ||| Sbjct 442734 CAT 442736 >seq20 Length=9260020 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || | || || | | || ||||| || || |||||||| || || | | Sbjct 134886 ATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGC 134827 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| || || || ||||| ||| || || ||||| Sbjct 134826 TGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTG 134767 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||||||||| |||||||| || |||| ||||| | || |||||| Sbjct 134766 TCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGC 134707 Query 172068 AT 172069 || Sbjct 134706 AT 134705 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || | || || || | |||| |||||| || || || || Sbjct 134478 ATACCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCG 134419 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || || ||||| || || || || || | |||||||||||| Sbjct 134418 GAGAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGG 134359 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| || ||||| || || ||||| | || Sbjct 134358 GGAATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCA 134299 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || |||||||| || ||||| || || | || |||||||| Sbjct 134298 ACTTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || | || || || | |||| |||||| || || || || Sbjct 134706 ATACCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCG 134647 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || || || || || || || || || | |||||||||||| Sbjct 134646 GAGAGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGG 134587 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || ||||| || ||||| || || ||||| | ||| Sbjct 134586 GGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCA 134527 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| ||||| ||||| | || || | || || ||||| Sbjct 134526 ACTTCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCAT 134477 >seq933 Length=6104033 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||| | |||||||| | ||| | ||||| ||| || |||||| Sbjct 5591665 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCT 5591724 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||||||||||||||| || || | | || ||||| || Sbjct 5591725 GATAAGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 5591784 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || ||||| || | || Sbjct 5591785 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCA 5591844 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| || ||||| | || || | ||| || ||||| Sbjct 5591845 ACTTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | |||||||| | ||||| || || || || || ||| Sbjct 5593945 ATACCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCT 5594004 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || || | || || ||||| |||||||| || || | | || ||||| || Sbjct 5594005 GATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5594064 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || || | |||| Sbjct 5594065 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 5594124 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || | || || || || || |||| ||| || | ||| ||||||||||| || Sbjct 5594125 ACCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTTTTT 5594180 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | |||||||| | ||| | ||||| ||| || || ||| Sbjct 5593033 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCT 5593092 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||||||||| || || | | || ||||| || Sbjct 5593093 GATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5593152 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| || ||||| || ||||| || | || Sbjct 5593153 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593212 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| || ||||| | || || | || || ||||| Sbjct 5593213 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||| | |||||||| | ||| | ||||| ||| || || ||| Sbjct 5593489 ATACCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCT 5593548 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||||||||| || || | | || ||||| || Sbjct 5593549 GATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5593608 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| || ||||| || ||||| || | || Sbjct 5593609 GGGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593668 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || |||||||| || || | || || | || || ||||| Sbjct 5593669 ACTTCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | |||||| || ||||| || | ||| | ||||| ||| || || || ||| Sbjct 5591440 CCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGAT 5591499 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || ||||||||||||||||| || || | | || ||||| || || Sbjct 5591500 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5591559 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || ||||| || || || ||||| || || || || | |||||| Sbjct 5591560 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTACC 5591619 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || || || || || | || || | ||| || ||||| Sbjct 5591620 TCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5591666 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | |||||||| | ||||| || || || || ||||| Sbjct 5592577 ATACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCA 5592636 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| |||||||||||| || || | | || ||||| || Sbjct 5592637 GAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGA 5592696 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || || | || Sbjct 5592697 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCA 5592756 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||| || || | || || | ||| || ||||| Sbjct 5592757 ACTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 >seq10062 Length=763049 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 |||||||||||| || ||| ||||| |||||||| || ||| || | |||||| Sbjct 235944 ATACATTTCAGAGTGGACATTCTCCATTGCTATTTGGAAGCCATAGAAACAACGTGCTTC 236003 Query 39479 TGAATAC-TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 39537 | ||| ||||| || | ||||| ||| || | || ||| || |||||||| | Sbjct 236004 CG-TTACTTGAACCTCTTGACTGAATCTTTCTACCAGGTTTTCATTAACGATACCATCCG 236062 Query 39538 ATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 39597 | || || || ||||| | |||| |||||||||||| || | |||||| |||| Sbjct 236063 AGGCAGCAAAAAATGCAAGTACATGCGAAATAAAATGTTTCTCGTCCGGTTTTAATTTTT 236122 Query 39598 CCCAAGATTCAAGATC 39613 ||||| | ||||||| Sbjct 236123 CCCAATCTGCAAGATC 236138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904912533235800