Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq74 123 7e-23 seq1096 95.1 4e-14 >seq74 Length=7515793 Score = 123 bits (136), Expect = 7e-23 Identities = 191/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || |||||||| || ||||| ||||| ||| Sbjct 4928215 TCCATAGCCTTGATCAGACGACGCTGGATGTAACCAGTCTCAGCAGTTTTGACAGCAGTA 4928156 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT--TCCGGTCGTAGCC 302692 ||||| ||||| ||||||| |||||||| ||||| | | ||| | |||| || | Sbjct 4928155 TCAATAAGACCTTCACGACCTCCCATAGCGTGGAAATAGAACTCAGATGGGGTC--AGAC 4928098 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAA 302752 | ||| | | ||| | || ||||| || | | ||| || || ||| ||| | | Sbjct 4928097 CAGCAAGATATGAGTTTTCGACGAACCCTCTTGACTCAGGACCATAATCGTCTTTGATGA 4928038 Query 302753 AGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCT 302812 |||| ||||| || || || | ||| | || ||||| || || ||||||||||||| Sbjct 4928037 AGTGAGGCAGCGTTCTTTTACGGAAACCGAAAGGAATACGTTTACCTTCAACGTTCTGCT 4927978 Query 302813 GTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | || | || | ||| | ||| ||||| || Sbjct 4927977 GACCTACACAAGCAATAACCTGGGAAATGTT 4927947 Score = 86.0 bits (94), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 ||| |||||| |||||||||| ||| || | ||||||||||| |||||||| ||||| Sbjct 4933329 GGGTACACCAAGGGTTACGTT---CTTTGAAGATACACCAGCAAAATGGAAAGTGTTCAG 4933273 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | |||||||| | |||||| || || | ||||||||||| || Sbjct 4933272 TGTCATCTGAGTGGCAGGCTCACCTAAACTTTGAGCAGCCAAAGCTCCAACCATTTCACC 4933213 Query 301950 TGG 301952 || Sbjct 4933212 AGG 4933210 >seq1096 Length=1820125 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 252532 TCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTC 252591 ||||||| | | ||||||||||| ||| | ||| | || || || |||||||||||| Sbjct 1123877 TCCATCCGAACGTGATAATTTGTAATATAAACACCCATGGCTTGTTTACCCATAGCACTC 1123818 Query 252592 TGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACA 252651 ||||||||||| |||||| || |||| || ||||| ||||| ||||| ||| Sbjct 1123817 TGGTAAGTATTCCTGGGACTTTGGTTGTGATCAGGGAACGGAATAATGGATGCACAAACT 1123758 Query 252652 CCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 |||| ||| | ||| ||||| ||||| || Sbjct 1123757 CCGAGGATCATAGCTGGATGAATCTCACAATG 1123726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471445142298087