Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq491 159 3e-34 seq20 84.2 2e-11 seq115 82.4 6e-11 >seq491 Length=1868248 Score = 159 bits (176), Expect = 3e-34 Identities = 204/281 (73%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || || |||| ||||| || |||||||||| | | | | || ||||| Sbjct 876435 GGAGGATTCTTCAAGATGAAAGTTATGAGCTTATGATTGCTCTCGATCAAACCATGATAC 876494 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 || || |||||||| |||| ||| || || ||| | || || |||| || || Sbjct 876495 CCACAAGCTTTGCAAGACTGATTGATGATATTGCGTTTGGTAGAGACATTGAGGTCCGTT 876554 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 || ||||| || ||||| ||||||| ||||||||||| ||||| ||||| |||| || Sbjct 876555 TCTGGGTTATCGCATTCAGGACACAGAACAAACTTGCGAATGAATCCATCGAGCAAATCT 876614 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACC 34443 || | ||| || || || || || || || |||||||| ||||||||| |||||| Sbjct 876615 TGAAGCTTGGAGGCCTCATGAGAACCATTTACAATGAATCGATCGTTTTTGAAATCGAAT 876674 Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||||||||||| |||| ||| || || |||||||||||||| Sbjct 876675 TGCGTTTGCGCTCCCAACTCACAGCCAAAGTACTTTGTCGG 876715 Score = 143 bits (158), Expect = 2e-29 Identities = 136/173 (79%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || ||||| ||||| || || |||| || | ||||||||| |||||||| ||||||||| Sbjct 878372 GCTGGACGACCAAGAGCTTTTGCGACATCAGCCATGTTGACAATGACAGTTTTGATGCCG 878431 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || |||||||| ||||||||||| || ||||||||| ||||| ||||| || || || Sbjct 878432 TTACCCTTTCCCTCGACCTTGGCCATGAGGCGCGGCATCTTGTAACGGTAAAAGGCATCG 878491 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG--GCTGGTGTTACTTAT 34662 | |||||| || || ||||| || || ||||| || |||| | | |||||| Sbjct 878492 GACACATTTCGATTGACGTTGACGGTACCCATGATGGAGCTGCTTTAACTTAT 878544 >seq20 Length=9260020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 ||||| || ||||||||||| |||| ||||||||||| || | ||| || |||| | Sbjct 134705 ATGCAGATCTTTGTCAAAACCCTAACAGGCAAAACCATCACTCTAGAAGTTGAAGCCTCA 134764 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || ||| || || ||||| |||||| | ||| || || Sbjct 134765 -GACACTATTGAAAACGTGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 134823 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| || || ||| |||| |||| ||||| || | || ||||| Sbjct 134824 ACAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACTCTGTCCGACTACAA 134883 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| ||||||||||| || Sbjct 134884 CATCCAAAAAGAATCGAC 134901 >seq115 Length=3414097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||||| || |||||||| || || | ||| ||| | Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| || ||| |||||||||||| | || || || Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| || ||||| |||| |||| | ||| | | ||||||||| Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAAC 442557 Query 110453 ATTCAAAAAG 110462 ||||| |||| Sbjct 442556 ATTCAGAAAG 442547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412742222705243