Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq115 120 5e-22 seq933 105 1e-17 seq20 91.5 2e-13 >seq115 Length=3414097 Score = 120 bits (132), Expect = 5e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | ||||| || || || |||||||| ||| |||| ||||| ||| | Sbjct 442735 TGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA- 442677 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || ||||| ||||||| |||| ||||| ||| |||||||||||||| || || || Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | ||||||||||| |||||||| || ||| | || || ||||||| || Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAAC 442557 Query 146211 ATACAAAAAG 146220 || || |||| Sbjct 442556 ATTCAGAAAG 442547 >seq933 Length=6104033 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || || || | || || || || Sbjct 5593261 TGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCCG 5593202 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||| || ||| || ||||| || || || || || | Sbjct 5593201 ATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAGC 5593142 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || |||||||||||||| ||| | || ||| |||| || || | Sbjct 5593141 AACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAACA 5593082 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| |||||||||| Sbjct 5593081 TTCAAAAAGAATCAACTCTCCATTTAGT 5593054 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | ||||| ||||| || || | || || || || Sbjct 5593717 TGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCCG 5593658 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||| || ||| || ||||| || || || || || | Sbjct 5593657 ATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAGC 5593598 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || |||||||||||||| ||| | || ||| |||| || || | Sbjct 5593597 AACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAACA 5593538 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | |||||||| Sbjct 5593537 TTCAAAAAGAATCAACTCTTCATTTAGT 5593510 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || || | || || || || Sbjct 5591893 TGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCCG 5591834 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || ||||| || || || || || | Sbjct 5591833 ATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAGC 5591774 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || ||||||||||| || ||| | || ||| ||||||| || | Sbjct 5591773 AACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAACA 5591714 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | |||||||| Sbjct 5591713 TTCAAAAAGAATCAACTCTTCATTTAGT 5591686 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | |||||||| || || || | || |||||| | | Sbjct 5591665 TGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAGGTAGAAGCTTCTG 5591606 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || || || ||| || ||||| || || || || || | Sbjct 5591605 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAGC 5591546 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || ||||||||||| || ||| | || || | || || || | Sbjct 5591545 AACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCCTATCCGACTACAACA 5591486 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | ||||||||||| ||| |||| ||||| || ||| Sbjct 5591485 TTCAAAAAGAATCCACTCTCCACTTAGTTTTGCGA 5591451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || || | || ||||| | Sbjct 5592349 TGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTAGAGGCCTCTG 5592290 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||| || || || ||| || ||||| || || || || || | Sbjct 5592289 ATACTATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAGC 5592230 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || ||||| |||||||| ||| | || || |||| || || | Sbjct 5592229 AACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTACAACA 5592170 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| ||| |||||||||| Sbjct 5592169 TCCAGAAGGAATCTACTCTCCATTTAGT 5592142 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | |||||||| || || || | || |||||| | Sbjct 5593489 TGCAAATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTAGAAGCCTCTG 5593430 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || || || ||| || ||||| || || || || || | Sbjct 5593429 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAGC 5593370 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || |||||||||||||| ||| | || ||| | || || || | Sbjct 5593369 AACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAACA 5593310 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | |||||||| Sbjct 5593309 TTCAAAAAGAATCAACTCTTCATTTAGT 5593282 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || || ||| | || || || | || Sbjct 5593945 TGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCCG 5593886 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || || || ||| || ||||| || || || || || | Sbjct 5593885 ACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAGC 5593826 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || |||||||||||||| ||| | || ||| | || || || | Sbjct 5593825 AACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAACA 5593766 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | |||||||| Sbjct 5593765 TTCAAAAAGAATCAACTCTTCATTTAGT 5593738 >seq20 Length=9260020 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | ||||| ||||||| ||||| || ||| | || || ||| | | | Sbjct 134706 TGCAGATCTTTGTCAAAACCCTAACAGGCAAAACCATCACTCTAGAAGTTGAAGCCTCA- 134764 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| |||| || ||| ||||| || || ||||||||||| || || ||| Sbjct 134765 GACACTATTGAAAACGTGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAA 134824 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || ||||| || || || || || ||| ||||| | | || || || Sbjct 134825 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACTCTGTCCGACTACAAC 134884 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || |||||||||||||| ||||| Sbjct 134885 ATCCAAAAAGAATCGACCCTCCAT 134908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785972305342920