Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq115 163 2e-35 seq20 125 6e-24 seq933 116 3e-21 >seq115 Length=3414097 Score = 163 bits (180), Expect = 2e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| |||||||| ||||| | | ||||| ||| || | ||||||||| ||| | | Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 ||||||| ||||| || || ||||| || ||||||||||| | ||| ||||||| ||| Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTT 442666 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | |||||| || |||||||||||||| || ||||||||||| || |||||||||| Sbjct 442667 CGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAA 442726 Query 29777 ATATCTGCAT 29786 | |||||||| Sbjct 442727 AAATCTGCAT 442736 >seq20 Length=9260020 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||| | ||| || || | ||| || || ||||||||||| ||||| || || | Sbjct 134931 CCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGAC 134872 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | || ||||||||| | ||||| | || || || || ||| Sbjct 134871 AGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 134812 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| ||| || |||| | |||||| || ||| ||| Sbjct 134811 ATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAACT 134752 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || |||||||| |||| |||||| ||||| |||||||| Sbjct 134751 TCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | ||| ||||| ||||| || || ||||| || ||||| || || | Sbjct 134703 CCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAG 134644 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | || || || || | ||||| | || || || || ||| Sbjct 134643 AGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134584 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | |||| || ||| | || | ||||| || ||| ||| Sbjct 134583 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCAACT 134524 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||||||||| | || || ||||| || ||||| Sbjct 134523 TCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCAT 134477 >seq933 Length=6104033 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| || ||||||||||||||||| || || | | |||||| ||| Sbjct 5593735 AGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 5593794 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | | |||||| || || || ||||| || |||||| Sbjct 5593795 TCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5593854 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || |||||| |||| | ||||| ||| || ||||| | ||| || || Sbjct 5593855 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTC 5593914 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||| || ||||| || ||||| Sbjct 5593915 TTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || || || || |||||||||||||||||||| || || | | |||||| | Sbjct 5591452 CGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGATAGGGTGCGGCCA 5591511 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| ||||| | || | | |||||| || || || ||||| || ||| Sbjct 5591512 TCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTG 5591571 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || |||||| | || | ||||||||| |||||| || | || ||| Sbjct 5591572 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTACCTCCAAGGTGATA 5591631 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || || ||||| Sbjct 5591632 GTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5591666 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| || ||||||||||||||||| ||||| | | |||||| ||| Sbjct 5591683 AGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCT 5591742 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| ||||| | || | | |||||| ||||| || ||||| || |||||| Sbjct 5591743 TCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCT 5591802 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || |||||| | || | || || || || ||||| | || || || Sbjct 5591803 TGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTC 5591862 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||| || || || || ||||| Sbjct 5591863 TTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| || ||||||||||||||||| || || | | |||||| ||| Sbjct 5593507 AGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCT 5593566 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| ||||| | || | | |||||| || || || ||||| || |||||| Sbjct 5593567 TCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5593626 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || ||| |||| | || || || || ||||| | || || || Sbjct 5593627 TG-AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGT 5593685 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || | ||| || ||||| || ||||| Sbjct 5593686 TTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || ||||| || || ||||||||||||||||| || || | | |||||| Sbjct 5593047 ACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCC 5593106 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | || | | |||||| || || || ||||| || || Sbjct 5593107 ATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTT 5593166 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || ||| |||| | || || || || ||||| | || | Sbjct 5593167 GTCTTG-AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGA 5593225 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||| || ||||| || ||||| Sbjct 5593226 TGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || |||||||| || ||||||||||||||||| || || | | |||||| ||| Sbjct 5593279 AGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 5593338 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | | |||||| || || || ||||| || |||||| Sbjct 5593339 TCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5593398 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || |||||| | || | |||||||| |||||| || | || || || Sbjct 5593399 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTC 5593458 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || || || || ||||| Sbjct 5593459 TTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || ||||| || || ||||| || || ||||||||||| | || ||| || Sbjct 5592819 ACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAAAGGGTACGGCC 5592878 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | | |||||| ||||| || ||||| || || Sbjct 5592879 ATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTT 5592938 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | || || || || ||||| | || || Sbjct 5592939 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCCAAGGTGAT 5592998 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || ||||| || ||||| Sbjct 5592999 GGTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || |||||||| || ||||| || || ||||| || || | | ||||| Sbjct 5593959 ACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCC 5594018 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | || | | |||||| || || || ||||| || || Sbjct 5594019 ATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTT 5594078 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | |||||||| |||||| || | || || Sbjct 5594079 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGAT 5594138 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || |||| || || || || ||||||||||| Sbjct 5594139 AGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTT 5594177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385126471839891