Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq933 170 4e-37 seq20 165 2e-35 >seq933 Length=6104033 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || ||||||||||| ||||| || || ||||||| Sbjct 5592350 TACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAG 5592409 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| |||||||| ||||| ||||| || | ||| || ||||||| Sbjct 5592410 AAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5592469 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||| || || || ||| || || | Sbjct 5592470 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAA 5592529 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || ||||| | ||||| || || || ||||| Sbjct 5592530 CTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || ||||||||||| ||||| || || ||||||| Sbjct 5592578 TACCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAG 5592637 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| |||||||| ||||| ||||| || | ||| || ||||||| Sbjct 5592638 AAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5592697 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||| || || || ||| || || | Sbjct 5592698 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAA 5592757 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || ||||| | ||||| || || || ||||| Sbjct 5592758 CTTCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || ||||||||||| ||||| || |||||||||| Sbjct 5592806 TACCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAG 5592865 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| |||||||| ||||| ||||| || | ||| || || |||| Sbjct 5592866 AAAGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAG 5592925 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||| || || ||||| | || | Sbjct 5592926 GGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGA 5592985 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| ||||| | ||||| ||||| || ||||| Sbjct 5592986 CTTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || ||||||||||| ||||| || || || || | Sbjct 5593946 TACCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTG 5594005 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| | | || ||||||| ||| || ||||| ||||| || | ||| || ||||||| Sbjct 5594006 ATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5594065 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||| || || || ||| | ||||| Sbjct 5594066 GGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTA 5594125 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | ||||| || || ||||| || || | ||||| || || ||||||||| || Sbjct 5594126 CCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTTT 5594178 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || ||||| |||||||| || || || || || | Sbjct 5593034 TACCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTG 5593093 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||||| |||||| ||||| ||||| || | ||| || ||||||| Sbjct 5593094 ATAAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAG 5593153 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || || ||||||||||| ||||| | || | Sbjct 5593154 GGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAA 5593213 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 5593214 CTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| || ||||||||||| ||||| || || || || | Sbjct 5591894 TACCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTG 5591953 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| | | || ||||||| ||| || ||||| ||||| || | || || ||||||| Sbjct 5591954 ATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAG 5592013 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || |||||||| || || || || || | Sbjct 5592014 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGCCTCAA 5592073 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| ||||| | ||||| || || || ||||| Sbjct 5592074 CTTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5592122 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 |||||||| || ||||| |||||||| || || || || || |||| | | || ||| Sbjct 5593507 AGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCT 5593566 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| |||||| ||||| ||||| || | ||| || |||||||| || |||||||| ||| Sbjct 5593567 TCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5593626 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || ||||||||||| ||||| | || |||||||| || || || Sbjct 5593627 TGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTT 5593686 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| | ||||| ||||| || ||||| Sbjct 5593687 TTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 |||||||| || ||||||||||| ||||| || || || || |||||| | | || ||| Sbjct 5592139 AGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCT 5592198 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| ||| || ||||| ||||| || | ||| || || ||||| || |||||||| ||| Sbjct 5592199 TCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCT 5592258 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||| || || |||||| | ||||||||||| || || || Sbjct 5592259 TGGATCTTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTACTTCCAAGGTGATGGTT 5592318 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| | ||||| || || || ||||| Sbjct 5592319 TTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592350 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 |||||||| || ||||| |||||||| || || || || || |||| | | || ||| Sbjct 5593735 AGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 5593794 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| |||||| || || ||||| || | ||| || |||||||| || |||||||| ||| Sbjct 5593795 TCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5593854 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || |||||||| || || || || || ||||||||||| || ||| Sbjct 5593855 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTC 5593914 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| ||||| || ||||| Sbjct 5593915 TTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 >seq20 Length=9260020 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | ||| || ||||| || ||||| |||||||| || || || || | Sbjct 134705 TACCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGG 134646 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||||| || ||||| || ||||| | | ||||| || || | Sbjct 134645 AGAGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGG 134586 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || || ||||| || ||||| ||||| || || | ||| | Sbjct 134585 GAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCAA 134526 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || || ||||| |||| |||||| ||||| || ||||| Sbjct 134525 CTTCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCAT 134477 Score = 152 bits (168), Expect = 1e-31 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | ||| || ||||| || ||||| ||||| || || || || || | Sbjct 134477 TACCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGG 134418 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||||| ||||| || || ||||| | | ||||| || || | Sbjct 134417 AGAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGG 134358 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || ||||| || ||||| ||||| || || || || | Sbjct 134357 GAATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAA 134298 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| | || || || || ||||| || ||||| ||||| |||||||| || Sbjct 134297 CTTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCATGAT 134246 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| || || | || || || |||||||| || || || || || || Sbjct 134932 ACCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGA 134873 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || ||||| | || || ||||||||||| | | ||||| ||||| || Sbjct 134872 CAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 134813 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTA 82761 || |||||||| || || || || ||||| || |||||||| || || | ||| ||| | Sbjct 134812 AATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTC-TGAGGCTTCAA 134754 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || || |||||||| | || || ||||| |||||||| Sbjct 134753 CTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981578739115589