Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq933 105 6e-18 seq16 100 3e-16 seq20 95.1 1e-14 seq115 84.2 2e-11 >seq933 Length=6104033 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || || |||||||| | ||| | | | || || | Sbjct 5591689 AAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCA-TCTTCCAA 5591747 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5591748 TTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGGAT 5591807 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| || |||| || ||| || || | ||||| ||| || || Sbjct 5591808 CTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTTCC 5591867 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| ||||| Sbjct 5591868 AGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | ||||| || |||||||| |||||||| ||||||||||| |||| Sbjct 5592205 TGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGGATC 5592264 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | || || | || ||| || || | ||||| |||||| || Sbjct 5592265 TTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTACTTCCAAGGTGATGGTTTTTCCT 5592324 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||| ||||| Sbjct 5592325 GTGAGAGTCTTGACGAAAATTTGCAT 5592350 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || |||||||| | || | | | || || || Sbjct 5592373 AAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCA-TCTTCCAG 5592431 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5592432 TTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGAT 5592491 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | ||||| | | ||| || || | ||||| |||||| || Sbjct 5592492 CTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGTGATGGTTTTTCC 5592551 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||| ||||| Sbjct 5592552 TGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || |||||||| | || | | | || || || Sbjct 5592601 AAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCA-TCTTCCAG 5592659 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5592660 TTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGAT 5592719 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | ||||| | | ||| || || | ||| | |||||| || Sbjct 5592720 CTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGTAATGGTTTTTCC 5592779 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||| ||||| Sbjct 5592780 TGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || || ||||| ||| | ||| | | | || || | Sbjct 5593285 AAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCA-TCTTCTAA 5593343 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5593344 TTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGAT 5593403 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| | || || || || | ||||| ||| || || Sbjct 5593404 CTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTCTTTCC 5593463 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| ||||| Sbjct 5593464 TGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | ||||| || |||||||| |||||||| ||||||||||| |||| Sbjct 5594029 TGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATC 5594088 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | ||||| | || || || || | ||||| || || ||| Sbjct 5594089 TTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTCTTTCCG 5594148 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 5594149 GTTAGTGTCTTGACGAAGATCTGCAT 5594174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || || || || ||| | ||||| || |||||||| |||||||| ||||||||| Sbjct 5592880 TCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTG 5592939 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | || |||| || ||| || || | ||||| | Sbjct 5592940 TCTTGGATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCCAAGGTGATG 5592999 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || || ||||| ||||| Sbjct 5593000 GTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | ||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct 5591977 TGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATC 5592036 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||||||| | ||| || || | ||||| || || || Sbjct 5592037 TTGGCCTTAACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAGGTGATAGTCTTTCCT 5592096 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| ||||| Sbjct 5592097 GTGAGGGTCTTGACGAAAATTTGCAT 5592122 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| || || ||||| ||| | ||| | | | || || | || || || Sbjct 5591470 GTGGATTCTTTTTGAATGTTGTAGTCGGATAGGGTGCGGCCA-TCTTCCAATTGTTTACC 5591528 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || |||||||| |||||||| ||||||||||| |||||| ||| Sbjct 5591529 AGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTT 5591588 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | | || || || | ||||| || || || || || || Sbjct 5591589 GACATTCTCGATGGTGTCAGAAGCTTCTACCTCCAAGGTGATAGTCTTTCCTGTGAGGGT 5591648 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 5591649 CTTGACGAAAATTTGCAT 5591666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5593573 TGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATC 5593632 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| || |||| || ||| || || | ||||| |||||| || Sbjct 5593633 TTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTTCCCT 5593692 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || ||||| ||||| Sbjct 5593693 GTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || || ||||| ||| | ||| | | | || || | Sbjct 5593741 AAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCA-TCTTCTAA 5593799 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5593800 TTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGAT 5593859 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | ||| || || | |||| ||| || || Sbjct 5593860 CTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTTTCC 5593919 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || ||||| ||||| Sbjct 5593920 AGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | ||||| || |||||||| |||||||| ||||||||||| ||| Sbjct 5593117 TGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATC 5593176 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| || |||| || ||| || || | ||||| ||| || || Sbjct 5593177 TTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTTCCA 5593236 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || ||||| ||||| Sbjct 5593237 GTGAGGGTCTTGACAAAAATTTGCAT 5593262 >seq16 Length=5839711 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| || || |||| ||| || |||| | || | ||| || || | |||||||| Sbjct 3534011 ACCTGGAATTCTCCGGAGAGGACCCGCCTCGAGTAGATGTTACTTGTGTATGGTTCAAAA 3534070 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 || ||||||||||| || ||||| || || | || || |||||| |||| || || Sbjct 3534071 GATTCGTTGTTGCCTAAGATCTGAGCAGTTGAAGCTGTTGGCATGGGTGCTAGAAGGAGG 3534130 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445 ||||| |||| || | || ||||| | || || || ||||||||||| | Sbjct 3534131 GAGTTACGCACTCCATGTTTGGCAATTTTTTGTTTTAGCGCAGCCCAGTCCCACAAATCT 3534190 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 | || || || |||||||| |||||||||| ||| Sbjct 3534191 GTTGGGGTAACATTCCACATATCGTACTGCAAAAT 3534225 >seq20 Length=9260020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| |||||||| || || ||||| ||| | || || || | | Sbjct 134454 AAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAAC 134395 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| ||| | || | ||||| ||||| || || |||||||||||||| ||| Sbjct 134394 TGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATT 134335 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | ||||| ||||| | | ||| || |||| ||||| |||||| || Sbjct 134334 TTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACTTCGAGGGTGATGGTTTTCCCT 134275 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || | || || || |||||||||||| Sbjct 134274 GTTAAGGTCTTGACAAAAATCTGCATG 134248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| || ||||| || || ||||| ||| || || || || | ||| Sbjct 134908 ATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTG 134849 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | ||||| ||||| || || |||||||||||||| ||| || Sbjct 134848 CTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TT 134790 Query 133577 TTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || || | | |||| ||||| | || || || || | |||| ||||||||| | Sbjct 134789 TGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTG 134730 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || |||||||| Sbjct 134729 TTAGGGTTTTGACAAAGATCTGCAT 134705 >seq115 Length=3414097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||||| || |||||||| | ||| | || || | || ||||| || ||| Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT--GAGCTG 133588 | | | ||||||||| ||||| |||||||| ||||| ||| |||||||| || | Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCT-TGAA-TTTTGCTTTTGACATT 442664 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | ||||| | | ||| || || | |||| |||||||| |||| |||||| || Sbjct 442665 TTCGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAAC 442724 Query 133649 GAAAATCTGCAT 133660 ||||||||||| Sbjct 442725 AAAAATCTGCAT 442736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483301449447240