Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 4e-14 seq933 91.5 1e-13 seq115 86.0 6e-12 >seq20 Length=9260020 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||||||||| |||||||||||| | || | |||||| Sbjct 134457 ACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCT 134398 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||| |||| |||| | ||||||||| || || || |||||||| || || Sbjct 134397 AACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 134338 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 |||||| |||| | || | || || | | ||| ||||||| || | ||||| Sbjct 134337 ATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACTTCGAGGGTGATGGTTTTC 134278 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || || | || || | ||||||||||||| Sbjct 134277 CCTGTTAAGGTCTTGACAAAAATCTGCATGA 134247 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||||||| || || | |||||| | ||| || || | | Sbjct 134898 GATTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCA 134839 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||||||| ||||| || |||||||| || || ||||| ||||| Sbjct 134838 AAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACG 134779 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | || ||||| | || | ||||| || || || ||||| Sbjct 134778 TTTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTG 134719 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 134718 ACAAAGATCTGCAT 134705 >seq933 Length=6104033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | |||| |||||||||||||||||||| | ||| || |||||| Sbjct 5593053 AACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTC 5593112 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | |||| ||||| || || |||||||| || ||||| || || Sbjct 5593113 TAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593172 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | ||| | ||||||| | ||| ||||| | || | || || Sbjct 5593173 AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTT 5593232 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||||| ||||| Sbjct 5593233 TCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | |||| |||||||||||||||||||| | ||| || |||||| Sbjct 5593509 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTC 5593568 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | |||| ||||| || || |||||||| || ||||| || || Sbjct 5593569 TAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593628 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | ||| | ||||||| | ||| ||||| | || | ||||| Sbjct 5593629 AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTT 5593688 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | ||||| ||||| Sbjct 5593689 CCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | |||| ||||||||||||||||||||| | ||| || |||||| Sbjct 5593737 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593796 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| |||| ||||| || || |||||||| || ||||| || || Sbjct 5593797 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593856 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | ||| | || |||| | ||| ||||| | || | || || Sbjct 5593857 GATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTT 5593916 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||||| ||||| Sbjct 5593917 TCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | |||| ||||||||||||||||||||| | ||| || |||||| Sbjct 5593281 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593340 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | |||||||||| |||| ||||| || || |||||||| || ||||| || || Sbjct 5593341 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTC 5593397 >seq115 Length=3414097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| ||||||||||| || | || ||| |||||| | ||||| || | | | | Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | | ||| || || ||||| ||||||||||| || |||||| ||| | | || Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTT 442666 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||| || | | ||| ||||| | || | ||||| ||||||| |||||| | | Sbjct 442667 CGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAA 442726 Query 132114 AAATCTGCAT 132123 |||||||||| Sbjct 442727 AAATCTGCAT 442736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476493530652360