Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq20 111 1e-19 seq933 93.3 4e-14 >seq20 Length=9260020 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||||| |||||| | ||||| || || ||||| || ||| | ||||| ||||||| || Sbjct 134242 AAACATCATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGA 134301 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 || || || || ||| | || || |||||| || || || || || || || Sbjct 134302 GGCTTCAGACACAATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCC 134361 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 || || || | | || | || ||||||||| | ||||||| |||| | || ||| Sbjct 134362 TGACCAACAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGA 134421 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || |||||||| || ||| |||| || || | |||||||||||||| Sbjct 134422 CTACAACATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGG 134475 >seq933 Length=6104033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | ||||| || ||| | Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || || || || || || ||||| || || || ||| Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5591775 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | ||||| | || || |||||| | ||||||| | | | |||| |||||| Sbjct 5591774 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAG--ATTACA 5591717 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5591716 ACATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5591668 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || ||| | ||||| | ||||| || ||| | Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || || || ||||| || || || ||| Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593599 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | ||||| | || || |||||| | ||||||| | | | |||| | |||| Sbjct 5593598 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAG--ACTACA 5593541 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5593540 ACATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593492 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || |||||| Sbjct 5593490 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTAGAAGCCTCT 5593431 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || || || || || || ||||| || || || ||| Sbjct 5593430 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593371 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || ||| |||||| | ||||||| | | | ||| ||||| Sbjct 5593370 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593311 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5593310 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || ||||| | ||||| | ||||| || || | Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || || || ||||| || || || ||| Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || ||| |||||| | ||||||| | | | ||| ||||| Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || |||||||||| | ||| || | || || Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5593720 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || ||||| | ||||| | ||||| || ||| | Sbjct 5593262 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5593203 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || || || ||||| || || || ||| Sbjct 5593202 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593143 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | ||||| | || || |||||| | ||||||| | | | |||| | |||| Sbjct 5593142 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAG--ACTACA 5593085 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||||||||| || | |||||||| Sbjct 5593084 ACATTCAAAAAGAATCAACTCTCCATTTAGT 5593054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444984511756320