Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10062 125 1e-23 seq16 120 4e-22 >seq10062 Length=763049 Score = 125 bits (138), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||| | |||| ||| || || ||||| |||||||| | ||| | || || Sbjct 235003 TCATCTCGAGAGATTAGTTCATTGCTGAAAGTGAGGCCAGGCATCAAACCCCTTTTCTTC 235062 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| || || | || ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 235063 AGCCAGAAAATTGAGGCGAAACTGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAATGCA 235122 Query 39761 ACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCT 39817 | | || || || | || || ||||| | ||||| ||| ||||| || ||| Sbjct 235123 ATCACTCGTTCGGCGAAGCTTGATGCATCATCAGCGATCCATTTCATGGCCCAGTCTGCT 235182 Query 39818 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| |||||||||||||||||||||| || ||||| || Sbjct 235183 TTCCTCTTTACACAAGGCATTGTTTCAATGGCATTGAA 235220 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| ||| || || || || | | |||||||||||| || |||| || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || || || || || ||||| | |||||| || | ||| |||||| || |||||||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 ||| |||||||| || || ||||| || ||||||||||| | |||||| ||| Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 ||||| ||| || || ||| | ||||| | ||| || Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 >seq16 Length=5839711 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 69518 CGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACC 69577 |||| || |||||||| ||| |||||||||||| || || |||||||| | || Sbjct 3537622 CGAACTCTTCTCCCCAGCAATCTGACAATCCAGGACAGTCGTTCGGACACATGAGACTCC 3537681 Query 69578 ACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGA 69637 |||| ||| | | ||||| ||||| ||| ||| ||||||||||| || ||||| Sbjct 3537682 ACACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAGA 3537741 Query 69638 GATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAA 69697 |||| | | || |||||| |||||||| ||||| || | || | ||| || | || Sbjct 3537742 GATCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAAA 3537801 Query 69698 TATCAGAATGCCATGGTTCTAGATATATCGC 69728 |||| | |||||| ||||| ||||| || || Sbjct 3537802 TATCCGCATGCCAAGGTTCCAGATAAATTGC 3537832 Score = 104 bits (114), Expect = 3e-17 Identities = 148/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 68409 TAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAG 68468 ||| | ||||||| |||| | ||| | | ||||| | | ||| ||||| | || Sbjct 3530095 TAGTTGGTACATAATGGTTAACTTACCAA-ATTCCATGCATGGAAGTGCATTGACGATAA 3530153 Query 68469 TTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGC 68528 ||||| || |||| || || ||||| | ||||| |||||| |||||| |||||||| Sbjct 3530154 TTTGGCGTAGTTTGGTTCTGCAATATGGACATTCAAAGATTGAGATTGATCTATGAAAGC 3530213 Query 68529 TCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT--A 68586 |||||||| || ||||| || | |||| | ||||| | ||||||||| | ||| || | Sbjct 3530214 ACCTCTATCAGCAGCCATCTTCAAAATAGTTTTTTGGGAAATTTCCCATACAGTTTTGTA 3530273 Query 68587 AAAATCTGTTTGATATCATCTGGAA 68611 ||| | || | ||||||||||| Sbjct 3530274 CAAAGCCTTT--AAATCATCTGGAA 3530296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686739210803640