Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq105 152 4e-32 seq10062 113 4e-20 >seq105 Length=4822286 Score = 152 bits (168), Expect = 4e-32 Identities = 239/342 (70%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| | |||||||||||||| || |||| ||| || | ||| || | ||| | Sbjct 223965 AGGTGACTTGGGTCCTGTTTATGGCTTCCAGTGGCGTCACTATGGTGCCGAGTATAAGGA 224024 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||||| | | ||||| |||||| |||| || || ||| | | || || || ||||| Sbjct 224025 TATGTTCACAGATTACACCAATCAAGGCATTGACCAACTGAAAGAAGTGATCGAAACGAT 224084 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 ||||| | ||| || || || || ||| |||| || ||||| || ||| | | Sbjct 224085 CAAATCAAACCCCAATGATCGCCGCATTATAATGTGTGCTTGGAATCCTGTAGACCTTCC 224144 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 | ||||| |||| ||||| || | | ||||||||| || ||||| || || Sbjct 224145 TAAAATGGCCCTGCCTCCTTGCCACTGCCTTGTTCAGTTTTATGTCGCTAATGGCGAGCT 224204 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 |||||||| ||| || || ||||| | ||||||||| || || || ||||| || |||| Sbjct 224205 GTCATGTCTATTATACCAGAGATCTGCTGACATGGGCCTTGGTGTGCCGTTCAATGTAGC 224264 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAA 41206 |||||| | || || || || ||||| || ||| | || || Sbjct 224265 AAGTTATTCGCTACTTACATACATGATCGCTCACATCACTAA 224306 >seq10062 Length=763049 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 43816 ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 ||||||||| | || ||||||||||| || || | || ||||||||||| || Sbjct 236118 ATTAAAACCGGACGAGAAACATTTTATTTCGCATGTACTTGCATTTTTTGCTGCCTCGGA 236059 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG-CAAGAAGTTCAATTACCAGAAG 43934 || || || |||||||| ||| ||| | || | ||||| |||||| || | |||| Sbjct 236058 TGGTATCGTTAATGAAAACCTGG-TAGAAAGATTCAGTCAAGAGGTTCAAGTAACGGAAG 236000 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 |||| ||||| ||||| || ||||| || || || ||| | || || |||||||| ||| Sbjct 235999 CACGTTGTTTCTATGGCTTCCAAATAGCAATGGAGAATGTCCACTCTGAAATGTATAGTT 235940 Query 43995 TTCTGATAGATACGTACATCAAAGAT 44020 | || || || || ||||| | |||| Sbjct 235939 TACTCATCGACACTTACATTAGAGAT 235914 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/226 (70%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACAT-AAAGCAGACTGGGCCCTTAA 44097 ||||| ||||| || |||||| | ||| | |||| | ||||||||||||||| | || Sbjct 235223 TTGTTCAATGCCATTGAAACAATGCCTT-GTGTAAAGAGGAAAGCAGACTGGGCCATGAA 235165 Query 44098 ATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||| | ||| || || | |||||| | | || ||||||| |||||| Sbjct 235164 ATGGATCGCTGATGATGCATCAAGCTTCGCCGAACGAGTGATTGCATTTGCAGCTGTGGA 235105 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || ||||| || || || || | || || ||| | |||||| | |||||||| Sbjct 235104 AGGAATCTTCTTCTCTGGCAGTTTCGCCTCAATTTTCTGGCTGAAGAAAAGGGGTTTGAT 235045 Query 44215 GCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAG 44258 |||||| | || ||||| ||||| |||| ||| ||||||| Sbjct 235044 GCCTGGCCTCAC--TTTCAGCAATGAACTAATCTCTCGAGATGAAG 235001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397360326254755