Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20 125 6e-24 seq16 111 1e-19 seq933 109 5e-19 >seq20 Length=9260020 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || ||||||||| || | | | ||||| | ||| || || Sbjct 134901 GTCGATTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCA 134842 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||||||||| || || || | || || || || ||| ||| |||| Sbjct 134841 GCAAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTC 134782 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | |||||||| |||||||||||||||||| || | |||||| || || ||| Sbjct 134781 ACGTTTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTT 134722 Query 27231 TTCACAAAGATTTGCATAGCTGCT 27254 || |||||||| |||||| || || Sbjct 134721 TTGACAAAGATCTGCATACCTCCT 134698 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | || ||||| || | ||||| ||||| || || ||||||||| Sbjct 134703 CCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAG 134644 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | ||| || |||||| | || | ||||||||| || || || Sbjct 134643 AGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134584 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||| || || | | || | ||||||| ||||||||| Sbjct 134583 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCAACT 134524 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | |||||| ||||| || |||||||| ||||||||| || || Sbjct 134523 TCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCATACCTCCT 134470 >seq16 Length=5839711 Score = 111 bits (122), Expect = 1e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||| ||| | |||||||| || |||||| || ||||||||||||| |||||| || Sbjct 3537654 GGACAGTCGTTCGGACACATGAGACTCCACACTCCATTCTGTTCAACTCTCTTCATGAAT 3537713 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 ||| || | ||| | ||||| || ||||| | ||| |||||| | || | Sbjct 3537714 TCATCAGGAATCCAAAGGGCGTAAAAGAGATCACGTGCTCGCACTTCTTCTTTTCCTGTG 3537773 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 |||| ||||| | |||||| || ||||| ||||||||||| ||||||| ||| | ||| Sbjct 3537774 TTTTTCTTCAAGTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAGATAAATTGC 3537832 Score = 100 bits (110), Expect = 2e-16 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 131798 TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAA 131857 ||||||||||||| ||||| || | |||||||| | || || | |||||| | | Sbjct 3538511 TTACCGCCTTGATCAACATATCGGGCTGTGTTGTTGAAAACTCGAAGCATGGGTACTATT 3538570 Query 131858 CCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917 || |||| ||||||| || | |||||| |||||| |||||||||| ||||| Sbjct 3538571 CCATTGGAAGTTCCATTTGTTCCTGCAATGTAACTGCCAGTGGCTCTGATGCAGTGAATA 3538630 Query 131918 TTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTT-AGAGTGTTATA 131976 | || ||| || |||||| | | || || || || || | |||| || ||||||| || Sbjct 3538631 TGGATTCCGATTCCTCCGGCAGACTTTGAAATAAGAGCAC-TTTGCTTCAGAGTGTCGTA 3538689 Query 131977 GATACCTTCCACGCTGTC-CGCGGCAATGTCGACTAAAAAGCA 132018 ||| ||||| | ||||| | | | ||| ||| |||||||| Sbjct 3538690 GATCCCTTCGATACTGTCTCTCCTC-ATGGCGAGCAAAAAGCA 3538731 >seq933 Length=6104033 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || ||||||||||| ||||||||| | | |||| | ||||| Sbjct 5593738 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 5593797 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| | |||||||| || || || || || | ||| || || || | Sbjct 5593798 AATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5593857 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || |||||||| | ||| || | || Sbjct 5593858 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTTT 5593917 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||| ||||||||| Sbjct 5593918 CCAGTGAGGGTCTTGACAAAAATTTGCATA 5593947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || ||||||||||| ||||||||| | | |||| | ||||| Sbjct 5593282 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 5593341 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| | |||||||| || || || || || | ||| || || || | Sbjct 5593342 AATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5593401 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | |||||| || || | || || | || Sbjct 5593402 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTCTTT 5593461 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || || ||||||||| Sbjct 5593462 CCTGTGAGGGTCTTGACGAAAATTTGCATA 5593491 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | ||||| || || || | || || ||||||||||| ||||||||| Sbjct 5591439 GCCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGA 5591498 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | ||||| | |||||||| ||| | |||||||| || || || || || Sbjct 5591499 TAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGG 5591558 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || ||||||| || | | || | ||||| | ||||| || Sbjct 5591559 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTAC 5591618 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| || || || || || || || || ||||||||| Sbjct 5591619 CTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCATA 5591667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || ||||||||||| |||||||| | | |||| | ||||| Sbjct 5593510 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTCT 5593569 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| | |||||||| || || || || || | ||| || || || Sbjct 5593570 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 5593629 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | |||| | || || | ||| |||||||| | || || | ||| Sbjct 5593630 ATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTTC 5593689 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||| ||||||||| Sbjct 5593690 CCTGTGAGGGTCTTGACAAAAATTTGCATA 5593719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || ||||||||||| ||||| || | | |||| | ||||| Sbjct 5591686 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCTTCC 5591745 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| | |||||||| || || ||||| || | ||| || || || | Sbjct 5591746 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5591805 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | || || | ||| |||||||| | || || | || Sbjct 5591806 ATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTT 5591865 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || || ||||||||| Sbjct 5591866 CCAGTAAGGGTCTTGACGAAAATTTGCATA 5591895 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || ||||||||||| |||||||| | | |||| | ||||| Sbjct 5593054 ACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTCT 5593113 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| | |||||||| || || || || || | ||| || || || Sbjct 5593114 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 5593173 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | |||| | || || | ||| |||||||| | || || | || Sbjct 5593174 ATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTT 5593233 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||| ||||||||| Sbjct 5593234 CCAGTGAGGGTCTTGACAAAAATTTGCATA 5593263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | ||||| || || || || |||||||| | |||| | ||||| Sbjct 5591914 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCT 5591973 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || ||||| ||| | ||||||||||| || || || || | ||| || || || | Sbjct 5591974 AATTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5592033 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || |||||||| | || |||| || Sbjct 5592034 ATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAGGTGATAGTCTTT 5592093 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || || ||||||||| Sbjct 5592094 CCTGTGAGGGTCTTGACGAAAATTTGCATA 5592123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424832111783112