Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq20 120 2e-22 seq933 111 1e-19 seq115 105 4e-18 >seq20 Length=9260020 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||| || || || ||| ||||| ||||| || || || Sbjct 134475 CCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAG 134416 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||||| ||||| || || |||||||||||||| || || Sbjct 134415 AGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134356 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||||| || || | |||||||||| ||| || Sbjct 134355 ATGCCTTCCTTGTCCTGGAT-TTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAAC 134297 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 ||| | ||| || ||||| || ||||| || || ||||||||||||||| || || Sbjct 134296 TTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCATGATGTTT 134242 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||| || || || ||| || || ||||| || || || Sbjct 134703 CCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAG 134644 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | || || ||||| || || |||||||||||||| || || Sbjct 134643 AGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134584 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| |||||||| ||| ||||| ||||| | |||||||||| ||| || | Sbjct 134583 ATTCCTTCCTTGTCCTGGAT-TTTTGCCTTAACATTCTCAATTGTGTCTGATGCT-TCAA 134526 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || ||||| || || | ||| ||||||||||| ||||| Sbjct 134525 CTTCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCAT 134477 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||| || || ||||| ||||| || || || Sbjct 134931 CCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGAC 134872 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | || || || ||||| || |||||||||||||| || || Sbjct 134871 AGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 134812 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | ||| ||| | ||| |||||| | || || Sbjct 134811 ATGCCTTCCTTGTCCTGGAT-TTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAAC 134753 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 134752 TTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 >seq933 Length=6104033 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||||||||| ||||| || ||||||||||| ||| Sbjct 5592808 CCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAA 5592867 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||||||||| || || || | ||| || |||||||| || Sbjct 5592868 AGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5592927 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | || || | || || || | ||| || Sbjct 5592928 ATACCTTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGAC 5592986 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || || |||||||| ||||| Sbjct 5592987 TTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||||||||| ||||| || ||||| ||||| ||||| || || Sbjct 5592361 AGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGG 5592420 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| || || || | ||| || ||||| || || | || ||| Sbjct 5592421 CCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCC 5592480 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||||| | || ||||| ||| ||||||| ||| Sbjct 5592481 TTGTCTTGGATC-TTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGT 5592539 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | || || || ||||| ||||| Sbjct 5592540 GATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||||||||| ||||| || ||||| ||||| ||||| || || Sbjct 5592589 AGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGG 5592648 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| || || || | ||| || ||||| || || | || ||| Sbjct 5592649 CCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCC 5592708 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||||| | || ||||| ||| ||||||| ||| Sbjct 5592709 TTGTCTTGGATC-TTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGT 5592767 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | || || || ||||| ||||| Sbjct 5592768 AATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||||||||| || ||||||||||| || ||||| | || || Sbjct 5593045 AGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGG 5593104 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || || | ||| || ||||| || || | || ||| Sbjct 5593105 CCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCC 5593164 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | ||||| | ||| || || | ||| ||||||| ||| Sbjct 5593165 TTGTCT-TGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGT 5593223 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || |||||||| ||||| Sbjct 5593224 GATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593262 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| ||||| || || ||||||||| || ||||||||||| || || || Sbjct 5591439 GCCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGA 5591498 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | ||||||||| || || || | ||| || ||||| || || Sbjct 5591499 TAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGG 5591558 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | || ||||||||| |||||| Sbjct 5591559 GATACCTTCCTTGTCTTGGATCTT 5591582 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| ||||| || ||||||||||| |||||||| | || || | ||||| Sbjct 5591686 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCTTCC 5591745 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| || || || | ||| || |||||||| || | || ||||||||| | Sbjct 5591746 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5591805 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || || | ||| || || | ||| ||||||| ||| || || || Sbjct 5591806 ATC-TTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTT 5591864 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| ||||| Sbjct 5591865 TCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||||||||| ||||| || ||||| || ||||| Sbjct 5591896 CCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5591955 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| || || || | |||||| ||||| || || Sbjct 5591956 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 5592015 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | ||||| | || ||||| ||| || Sbjct 5592016 ATACCTTCCTTGTCTTGGATC-TTGGCCTTAACATTTTCGATGGTGTCGGAAGCCTCAAC 5592074 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || || || ||||| ||||| Sbjct 5592075 TTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5592122 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||||||||| ||||| || ||||| || ||||| || || || | ||||| Sbjct 5592142 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCT 5592201 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| || || || | ||| || |||||||| || | || ||||||||| | Sbjct 5592202 AATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5592261 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | ||||| | || || || | ||| ||||||| ||| || ||||| Sbjct 5592262 ATC-TTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTACTTCCAAGGTGATGGTTTT 5592320 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| ||||| Sbjct 5592321 TCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| ||||| || ||||||||||| || ||||| | || || | ||||| Sbjct 5593510 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTCT 5593569 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| || || || | ||| || ||||| || || | || ||||||||| || Sbjct 5593570 AATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT-TG 5593628 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | || | ||||| | ||| || || | ||| ||||||| ||| || ||||| Sbjct 5593629 AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTT 5593688 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || |||||||| ||||| Sbjct 5593689 CCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 >seq115 Length=3414097 Score = 105 bits (116), Expect = 4e-18 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| |||||||| ||||| ||| | ||||| | |||||| || ||||| Sbjct 442546 CCTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAA 442605 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||| ||||| || || | || || |||||| ||| ||| |||| || | Sbjct 442606 ATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCT-TGAATTTTGCTTTTGACATT 442664 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || |||||| ||| ||||| | || || ||||| || || || ||||| || Sbjct 442665 TTCGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAAC 442724 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 442725 AAAAATCTGCAT 442736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314653839765983