Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq20 140 3e-28 seq115 138 1e-27 seq933 118 9e-22 seq828 93.3 4e-14 >seq20 Length=9260020 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || ||||| | || ||||| ||||| ||| | || Sbjct 134705 ATGCAGATCTTTGTCAAAACCCTAACAGGCAAAACCATCACTCTAGAAGTTGAAGCCTCA 134764 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||| || ||||| |||||||| || || || ||| Sbjct 134765 GACACTATTGAAAACGTGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAA 134824 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||| || |||||||| | || | ||||| |||||| Sbjct 134825 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACTCTGTCCGACTACAAC 134884 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| || |||||| | ||| | || | ||| | ||||| || Sbjct 134885 ATCCAAAAAGAATCGACCCTCCATCTTGTCCTCCGTCTTCGGGGAGG 134931 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || | || || || | || || || ||||| || | || Sbjct 134248 CATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGAGGCTTC 134307 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || |||||| || ||||| |||||||| || || || || Sbjct 134308 AGACACAATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCA 134367 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | |||||||||||| || ||||| | || | ||||| ||||| Sbjct 134368 ACAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGACTACAA 134427 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| ||||| ||| | || ||||| || | ||| | || || || Sbjct 134428 CATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGGTAT 134478 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| ||||| | ||||| || ||||| ||| | || Sbjct 134477 ATGCAAATTTTTGTGAAGACGCTGACTGGCAAAACAATTACCCTGGAAGTTGAAGCATCA 134536 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || |||||| || ||||| ||||| || || || || ||| Sbjct 134537 GACACAATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 134596 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || || ||||| | || | ||||| |||||| Sbjct 134597 CAGCGTTTGATCTTCGCCGGAAAGCAGTTAGAAGATGGAAGAACTCTCTCCGACTACAAC 134656 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| || | ||| | || || || Sbjct 134657 ATCCAGAAAGAGTCTACACTTCACTTGGTCCTGAGATTGAGAGGAGGTAT 134706 >seq115 Length=3414097 Score = 138 bits (152), Expect = 1e-27 Identities = 146/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| ||||| | || ||||||||||| || | || Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||||||||||||||||||||| || || || || Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||||||||||||||| | || | || ||||||||| Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAAC 442557 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 442556 ATTCAGAAAGG 442546 >seq933 Length=6104033 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| |||| || | || || ||| | || Sbjct 5591666 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACTATCACCTTGGAGGTAGAAGCTTCT 5591607 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| ||||| || || || || || Sbjct 5591606 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5591547 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||||||||||| | ||| | ||||| |||||| Sbjct 5591546 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCCTATCCGACTACAAC 5591487 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||| || || || | || || |||||||| | || |||||| Sbjct 5591486 ATTCAAAAAGAATCCACTCTCCACTTAGTTTTGCGACTTCGTGGTGGC 5591439 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || ||| | ||||| || | ||| Sbjct 5593946 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAGGCTTCC 5593887 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| ||||| || || || || || Sbjct 5593886 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593827 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||||| ||||| | ||| | ||||| |||||| Sbjct 5593826 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593767 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||||| ||| | | |||| ||||| || Sbjct 5593766 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGGTAT 5593717 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || || | ||||| || | ||| Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || |||||||| ||||| || || || || || Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACCAG 5591775 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||||||||||| | ||| | || ||||||||| Sbjct 5591774 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 5591715 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||||| ||| | | |||| ||||| || Sbjct 5591714 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGGTAT 5591665 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || || | ||||| || | ||| Sbjct 5593262 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5593203 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| ||||| || || || || || Sbjct 5593202 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593143 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||||| ||||| | ||| | || || |||||| Sbjct 5593142 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593083 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||||| ||| | ||| | || ||||| || Sbjct 5593082 ATTCAAAAAGAATCAACTCTCCATTTAGTTCTCCGTCTCCGTGGTGGTAT 5593033 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || || | || || ||| | || Sbjct 5593490 ATGCAAATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTAGAAGCCTCT 5593431 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| ||||| || || || || || Sbjct 5593430 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593371 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||||| ||||| | ||| | ||||| |||||| Sbjct 5593370 CAACGTCTCATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCTTATCCGACTACAAC 5593311 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||||| ||| | | |||| ||||| || Sbjct 5593310 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGGTAT 5593261 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || || | ||||| | ||||| || | || Sbjct 5592806 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATTACCTTGGAAGTTGAGGCTTCT 5592747 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || |||||||| ||||| || || || || || Sbjct 5592746 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592687 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| ||||||| | || |||| ||||||||| Sbjct 5592686 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAAC 5592627 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||||| ||| | ||| | || ||||| || Sbjct 5592626 ATCCAGAAGGAATCTACTCTCCATTTAGTTCTCCGTCTCCGTGGTGGTAT 5592577 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || || | || || | ||||| || | || Sbjct 5592578 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTTGAGGCTTCT 5592519 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || |||||||| ||||| || || || || || Sbjct 5592518 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 5592459 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| ||||||| | || |||| ||||||||| Sbjct 5592458 CAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAAC 5592399 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||||| ||| | ||| | || ||||| || Sbjct 5592398 ATCCAGAAGGAATCTACTCTCCATTTAGTTCTCCGTCTCCGTGGTGGTAT 5592349 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || || | || || | ||||| || | ||| Sbjct 5593718 ATGCAAATTTTTGTCAAGACCCTCACAGGGAAAACCATCACCTTGGAAGTTGAGGCCTCC 5593659 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| ||||| || || || || || Sbjct 5593658 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5593599 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||||| ||||| | ||| | || || |||||| Sbjct 5593598 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGATGGCCGCACCTTATCAGACTACAAC 5593539 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||||| ||| | | |||| ||||| || Sbjct 5593538 ATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGGTAT 5593489 >seq828 Length=2020852 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 ||| || |||||||| ||||| ||| | |||||||||||||||| || | ||| || Sbjct 1002560 AGGATGCATGTGGTCAATTTGTGGTATCCACGATCAAGGATGGAGTGAAAGAGCAGTATT 1002501 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTA 135768 |||||| || ||||| ||||| ||||| ||||| | ||| ||||| || | ||| ||| Sbjct 1002500 TGGCAAAATCCGCTACATGAATTATGAAGGTTGCAAAAGGAAATTCGATATTAATGGGTA 1002441 Query 135769 C 135769 | Sbjct 1002440 C 1002440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434811024083520