Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq933 87.8 1e-12 seq115 86.0 4e-12 >seq933 Length=6104033 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || |||||||| || || || | || || || | || Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| || || ||||| |||||| | || ||| | Sbjct 5591834 GATACCATTGAGAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGACC 5591777 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || || || ||||||||||| || | |||| ||| || ||||||| Sbjct 5591776 AGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACA 5591717 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| | ||||| ||| | | ||||||| || Sbjct 5591716 ACATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5591668 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || |||||||| | || || || || ||||||||||| Sbjct 5591573 GACAAGGAAGGTATCCCTCCAGACCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAA 5591514 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | | ||||| |||||||| |||||||| |||| | || || |||||| Sbjct 5591513 GATGGCCGCACCCTATCCGACTACAACATTCAAAAAGAATCCACTCTCCACTTAGTTTTG 5591454 Query 28003 CGTTTGCGTGGCGGC 28017 || | ||||| ||| Sbjct 5591453 CGACTTCGTGGTGGC 5591439 >seq115 Length=3414097 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | ||||| ||| || || |||| || || ||| | Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAG-GCATC 442678 Query 27850 -GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || |||||| ||||| ||||||||||| |||| || || Sbjct 442677 AGACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 442618 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| | || |||||||| || ||||||||||| || | |||| | || |||||||| Sbjct 442617 GCAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAA 442558 Query 27969 CATCCAAAAAG 27979 ||| || |||| Sbjct 442557 CATTCAGAAAG 442547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355776738471177