Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20 140 2e-28 seq115 122 6e-23 seq933 120 2e-22 >seq20 Length=9260020 Score = 140 bits (154), Expect = 2e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || ||||| |||||||| |||||||| || | Sbjct 134705 ATGCAGATCTTTGTCAAAACCCTAACAGGCAAAACCATCACTCTAGAAGTTGAAGCCTCA 134764 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | ||| ||||| ||||| ||||| | || ||||| ||| Sbjct 134765 GACACTATTGAAAACGTGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAA 134824 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| ||||| || ||||||| | | | ||| | ||| |||||| Sbjct 134825 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACTCTGTCCGACTACAAC 134884 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 134885 ATCCAAAAAGAATCGAC 134901 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | || || ||||| ||||| ||||||||||| | | Sbjct 134249 ATGCAGATTTTTGTCAAGACCTTAACAGGGAAAACCATCACCCTCGAAGTTGAGGCTTCA 134308 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||||| ||||| ||||| | || || || || Sbjct 134309 GACACAATTGAGAATGTGAAGGC-AAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCA 134367 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || ||||||||||| | ||||| | | | ||| | ||| ||||| Sbjct 134368 ACAGCGTTTGATCTTCGCCGGCAAACAGTTAGAAGATGGAAGAACTCTCTCCGACTACAA 134427 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || | || || || | || ||| ||||||| Sbjct 134428 CATCCAAAAAGAGTCTACCCTTCACTTGGTCCTGAGATTGAGAGGAGG 134475 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || || ||||| || || || |||||||| | | Sbjct 134477 ATGCAAATTTTTGTGAAGACGCTGACTGGCAAAACAATTACCCTGGAAGTTGAAGCATCA 134536 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| |||||| | ||||| ||||| | || || || || Sbjct 134537 GACACAATTGAGAATGTTAAGGCAAAAA-TCCAGGACAAGGAAGGAATTCCCCCTGACCA 134595 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || ||||| || || | ||||| | | | ||| | ||| ||||| Sbjct 134596 ACAGCGTTTGATCTTCGCCGGAAAGCAGTTAGAAGATGGAAGAACTCTCTCCGACTACAA 134655 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| ||| | || || || | || ||| ||||||| Sbjct 134656 CATCCAGAAAGAGTCTACACTTCACTTGGTCCTGAGATTGAGAGGAGG 134703 >seq115 Length=3414097 Score = 122 bits (134), Expect = 6e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| | || || ||||| |||||||| ||||| || | | Sbjct 442736 ATGCAGATTTTTGTTAAAACTTTGACTGGCAAAACAATCACTCTTGAAGTAGAGGCATCA 442677 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | ||| |||||| ||||||||||| | || || || || Sbjct 442676 GACACTATCGAAAATGTCAAAAGCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAG 442617 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||||||| ||||||| | ||||| || ||||||||| Sbjct 442616 CAGAGATTGATTTTTGCAGGCAAACAATTGGAAGATGGGCGCACACTATCAGATTACAAC 442557 Query 23791 ATACAAAAAG 23800 || || |||| Sbjct 442556 ATTCAGAAAG 442547 >seq933 Length=6104033 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || ||||| || ||||| | |||||||| || | Sbjct 5591894 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAGGCCTCC 5591835 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| |||||| | || || || || Sbjct 5591834 GATACCATTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCGGACCA 5591776 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || |||||| ||||||| | ||||| ||| |||||||| Sbjct 5591775 GCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCCGCACCTTATCAGATTACAA 5591716 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || | ||||||||| | || |||| || || Sbjct 5591715 CATTCAAAAAGAATCAACTCTTCATTTAGTTCTCAGACTGCGTGGTGG 5591668 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| |||||||| ||||| | |||||||| | | Sbjct 5592578 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATCACCTTGGAAGTTGAGGCTTCT 5592519 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | | ||||| |||||| | || ||||| || Sbjct 5592518 GACACCATCGAGAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCAGACCA 5592460 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || |||||||||||||| | || ||| | |||||||| Sbjct 5592459 GCAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAA 5592400 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||||||||| Sbjct 5592399 CATCCAGAAGGAATCTACTCTCCATTTAGTT 5592369 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| |||||||| || || | |||||||| | | Sbjct 5592806 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAAACCATTACCTTGGAAGTTGAGGCTTCT 5592747 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | | ||||| |||||| | || ||||| || Sbjct 5592746 GACACCATCGAGAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCAGACCA 5592688 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || |||||||||||||| | || ||| | |||||||| Sbjct 5592687 GCAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACTCTTTCTGATTACAA 5592628 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||||||||| Sbjct 5592627 CATCCAGAAGGAATCTACTCTCCATTTAGTT 5592597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || || || || ||||| || ||||| | || || || || Sbjct 5594177 AAAATGCAGATCTTCGTCAAGACACTAACCGGAAAGACTATCACCTTGGAGGTAGAAGCC 5594118 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| |||||| | || ||||| Sbjct 5594117 TCTGACACCATCGAGAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGTATCCCTCCAGA 5594059 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| | || || || || || ||| | ||||| | |||||| || || || Sbjct 5594058 CCAGCAACGTCTCATCTTCGCTGGTAAGCAATTAGAAGATGGCCGCACTCTATCAGACTA 5593999 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || || || || | ||||||||| Sbjct 5593998 CAACATCCAGAAGGAATCTACTCTTCATTTAGTT 5593965 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || |||||||| ||||| || ||||| | ||||| || || | Sbjct 5593034 ATGCAAATTTTTGTCAAGACCCTCACAGGAAAGACCATCACCTTGGAAGTCGAGGCCTCC 5592975 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| |||||| | || || || || Sbjct 5592974 GATACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCGGACCA 5592916 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || |||||||||||||| | || || | ||||| || Sbjct 5592915 GCAACGTCTCATCTTCGCTGGTAAACAACTGGAAGATGGCCGTACCCTTTCTGATTATAA 5592856 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||||||||| Sbjct 5592855 CATCCAGAAGGAATCTACTCTCCATTTAGTT 5592825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337928235913508