Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10062 118 1e-21 seq16 98.7 1e-15 >seq10062 Length=763049 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48392 TTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451 ||| ||| |||| ||| |||||| || || | | |||||||||||| ||||| | ||| Sbjct 235905 TTCTTTGGGATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATT 235964 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511 || ||||| || || || || || ||||| | ||||| || | || ||||| || Sbjct 235965 CTCCATTGCTATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACT 236024 Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571 |||| ||| ||| || ||||| || || ||||| |||||||||||||| | ||| Sbjct 236025 GAATCTTTCTACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTAC 236084 Query 48572 ATGTTTAATAAAATATTTTTCGT 48594 ||| |||||||| ||| |||| Sbjct 236085 ATGCGAAATAAAATGTTTCTCGT 236107 >seq16 Length=5839711 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 ||| | ||||| | | ||| ||||| | | ||||| || | || || || |||| Sbjct 3530120 CCAAATTCCATGCATGGAAGTGCATTGACGATAATTTGGCGTAGTTTGGTTCTGCAATAT 3530179 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | | ||||| || ||| |||||| |||||||| ||||||||||| ||||| || | || Sbjct 3530180 GGACATTCAAAGATTGAGATTGATCTATGAAAGCACCTCTATCAGCAGCCATCTTCAAAA 3530239 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || ||||| | ||||||||| | ||||||| | | || | ||||||||||| Sbjct 3530240 TAGTTTTTTGGGAAATTTCCCATACAGTTTTGTACAAAGCCTTTAAATCATCTGGAA 3530296 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || ||||| || ||||| | ||||| ||| ||||| || |||||| | ||| || | Sbjct 3538508 TTGTTACCGCCTTGATCAACATATCGGGCTGTGTTGTTGAAAACTCGAAGCATGGGTACT 3538567 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--ATTAC 78270 || || || || |||||||||||||| | ||| ||||| ||| | || | || | | Sbjct 3538568 ATTCCATTGGAAGTTCCATTTGTTCCTGCAATGTAACTGCCAGTGGCTCTGATGCAGTGA 3538627 Query 78271 TAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTAT 78330 |||| || || |||||||| || ||| || || ||||| | | |||| || | Sbjct 3538628 ATATGG--ATTCCGATTCCTCCGGCAGACTTTGAAATAAGAGCACTTTGCTTCAGAGTGT 3538685 Query 78331 CGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||||| || || |||||||| | ||||| || | ||| ||||| Sbjct 3538686 CGTAGATCCCTTCGATACTGTCTCTCCTCATGGCGAGCAAAAAGCAGCT 3538734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694497294956640