Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq16 104 3e-17 seq10062 100 4e-16 >seq16 Length=5839711 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 ||| | ||||| | | ||| ||||| | || ||||| || | || || || |||| Sbjct 3530120 CCAAATTCCATGCATGGAAGTGCATTGACGATAATTTGGCGTAGTTTGGTTCTGCAATAT 3530179 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 | | ||||| || ||| |||||| |||||||| ||||||||||| ||||| || | || Sbjct 3530180 GGACATTCAAAGATTGAGATTGATCTATGAAAGCACCTCTATCAGCAGCCATCTTCAAAA 3530239 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || ||||| | ||||||||| | ||||||| | | || | ||||||||||| Sbjct 3530240 TAGTTTTTTGGGAAATTTCCCATACAGTTTTGTACAAAGCCTTTAAATCATCTGGAA 3530296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || || |||||||| ||| ||| |||||||| || ||||||||||| | |||| Sbjct 3537624 AACTCTTCTCCCCAGCAATCTGACAATCCAGGACAGTCGTTCGGACACATGAGACTCCAC 3537683 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 | |||| | | ||| | ||||| || |||||| ||||| || || ||| ||| Sbjct 3537684 ACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAGAGA 3537743 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | || |||||| |||||||| || || || | |||| || || | |||| Sbjct 3537744 TCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAAATA 3537803 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGC 76731 || | |||||| ||||| ||||| || || Sbjct 3537804 TCCGCATGCCAAGGTTCCAGATAAATTGC 3537832 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| || | || | | | ||| || ||||| || |||||||| | |||| Sbjct 3534014 TGGAATTCTCCGGAGAGGACCCGCCTCGAGTAGATGTTACTTGTGTATGGTTCAAAAGAT 3534073 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || ||||| || || || |||||||||||||| || ||||| ||||| | | | Sbjct 3534074 TCGTTGTTGCCTAAGATCTGAGCAGTTGAAGCTGTTGGCATGGGTGCTAGAAGGAGGGAG 3534133 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | | |||||| | ||||| | |||||| ||| ||||| | ||||| | Sbjct 3534134 TTACGCACTCCATGTTTGGCAATTTTTTGTTTTAGCGCAGCCCAGTCCCACAAATCTGTT 3534193 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 || ||||| ||| | |||||| || | ||| Sbjct 3534194 GGGGTAACATTCCACATATCGTACTGCAAAAT 3534225 >seq10062 Length=763049 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||||| | |||| ||| || || ||||| |||||||| | || | || | Sbjct 235001 CTTCATCTCGAGAGATTAGTTCATTGCTGAAAGTGAGGCCAGGCATCAAACCCCTTTTCT 235060 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| || || | |||||| ||||| ||||| || ||||| ||||| || |||| Sbjct 235061 TCAGCCAGAAAATTGAGGCGAAACTGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAATG 235120 Query 46772 CGACAAGTCTCTCTCCGTAACTGG---CATCATTATGAATCCACCTTTGA--GCCCAATC 46826 | | | || || || | || | |||||| | ||||| ||| | ||||| || Sbjct 235121 CAATCACTCGTTCGGCGAAGCTTGATGCATCATCAGCGATCCA--TTTCATGGCCCAGTC 235178 Query 46827 AGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || || |||||||||||||||||||||| || ||||| || Sbjct 235179 TGCTTTCCTCTTTACACAAGGCATTGTTTCAATGGCATTGAA 235220 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||| ||| || || || || | | |||||||||||| || || | || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | |||||| || | || |||||| || |||| ||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 || || ||||| || || ||||| |||||||||||||| | |||||| ||| Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 47070 AAAATATTTTTCATC 47084 ||||| ||| || || Sbjct 236094 AAAATGTTTCTCGTC 236108 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || || || || |||||||| |||||| ||||||| | ||||||||| || | Sbjct 234086 AGCCTGTCAGCCACGAATTCAATATACTGCTTCATCAGAGTCCCATTCATTCCAATCATA 234145 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || | |||||| |||||||||||||||||||| | || || ||| ||| || Sbjct 234146 GCAACTGGCAAAGCCTCGGTAAGAAACTCTTGTTCAATCTTCACTGCGTCCATTATGATT 234205 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | ||| | || ||||| ||| || || | ||||| ||||| | || || ||| Sbjct 234206 TCCTTAACTCTATCTTCACTGGGTTTTTGAATGATGTGTTTGAACATCAGGCACGCGAAA 234265 Query 46639 TCACAATGAAGGCC 46652 ||||| || || || Sbjct 234266 TCACAGTGGAGACC 234279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712758385408320