Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq20 107 2e-18 >seq20 Length=9260020 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| ||||||||||| || | | || || | |||||| |||||||| Sbjct 134668 CTCTTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAA 134609 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||||||||| | ||||| | ||||||||| ||||||| ||| | Sbjct 134608 GATCAAACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATT 134549 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | || || |||| || || ||||| || ||||||||||| || Sbjct 134548 CTCAATTGTGTCTGATGCTTCAACTTCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCAC 134489 Query 41851 GAAAATCTGCAT 41862 ||||| ||||| Sbjct 134488 AAAAATTTGCAT 134477 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| || || ||||| ||||||||||| || | | || || | ||| ||||||||||| Sbjct 134440 CTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAA 134381 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||||||||| | ||||| || ||||||||| ||||||| ||||| Sbjct 134380 GATCAAACGCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATT 134321 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| || || | || || ||||| || || | ||||| || Sbjct 134320 CTCAATTGTGTCTGAAGCCTCAACTTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGAC 134261 Query 41851 GAAAATCTGCATG 41863 |||||||||||| Sbjct 134260 AAAAATCTGCATG 134248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || || || || ||||| |||||||| Sbjct 134931 CCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGAC 134872 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | ||||||||| || || |||| ||||||||||| | |||| Sbjct 134871 AGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 134812 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || |||| |||| ||| | | |||||| | || || Sbjct 134811 ATGCCTTCCTTGTCC-TGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAAC 134753 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || || || || || |||||||| Sbjct 134752 TTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCAT 134705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462189862921200