Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq957 96.9 4e-15 seq714 93.3 4e-14 >seq957 Length=827651 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 119939 GGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATT 119998 ||| ||||| ||||||||| |||||| || ||||| ||||| |||| | | ||||||||| Sbjct 413817 GGACTCTCGGTCCATTCCAATATTTTCTTGGCCCAATACATGCGTAGGAAACCATGCATT 413758 Query 119999 TTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAGGGATCGTGTGT 120051 || ||||| | || | ||| | ||||| | |||||||||| ||| ||||| Sbjct 413757 TTTCCTTCTTGCACAAGTTGTAACTGTGCCGAGTTCCATAAGTCATCATGTGT 413705 >seq714 Length=734366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||||||| |||||||||| || || || | ||| | | ||||||||| || || | Sbjct 42113 TAATCTATCAGCTACAAATTGAATGTACTGTCTCATAAGGTTGCAGTTCATACCAATCAT 42172 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA- 16910 | |||||| | |||||| || | ||| ||| || ||| || || |||||||||| Sbjct 42173 ATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCAATAGTTACAGCATCCTTAATAAT 42232 Query 16911 TACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 | || | ||| ||||| | |||| | || | ||| || ||||| |||||||| | Sbjct 42233 TTCTTTC-ACTTCATCCTCAGTCGGTTTTTGAACCAAATGCTTGAACATGAGACATGCAA 42291 Query 16971 AATCGCAATGTAATCCCT 16988 |||| ||||| | |||| Sbjct 42292 AATCACAATGCAGACCCT 42309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517385212618560