Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq714 104 2e-17 >seq714 Length=734366 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| ||||| || |||| ||||||||||||||| || | || || || || || ||| Sbjct 47756 ATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGCAATTTGA 47815 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || |||||||| |||| || || | | ||||||||| | |||| ||| | ||| Sbjct 47816 AAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTCTACAAGG 47875 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || ||||| || || || || ||| ||||| || || | || ||| ||||||| Sbjct 47876 TTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATATGAAATGC 47935 Query 16652 TTTTCGTCAGATGTAAG 16668 |||| ||| |||||| Sbjct 47936 CTTTCATCATTTGTAAG 47952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511255912677440