Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq495 105 5e-18 >seq495 Length=1347633 Score = 105 bits (116), Expect = 5e-18 Identities = 226/334 (68%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 |||| ||| || ||||| | | ||| || |||| || ||||| || ||||| |||||| Sbjct 721669 GCAACCATACATGTTAACAATGCATAACTTGCAACATTGAATGGTACACCTAATCCCATA 721728 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTT 101881 ||||| || | ||| || | || || ||||||| | | ||||| || ||| Sbjct 721729 TCAGCAGAACGTTGGTATAACTGGCAAGAAAGCTCTTTGCCTGCTACATAGAACTGAACG 721788 Query 101882 AATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC---ATTCCAAGCACA 101937 | ||| ||||| || || | |||||||||| || || ||| ||||||||||| Sbjct 721789 AG-ACAGTGACATGGTGGGAGAGCCATTTTAGGTATATC---AACTGGATTCCAAGCACT 721844 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTG 101997 ||| | || | | ||| ||| || | || ||| | ||||||| | ||||| Sbjct 721845 CATGATAATACGACGATCATCAGGCTTGTTCTTGATAATTTCAATCACGCGCAACAATTG 721904 Query 101998 GTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCT 102057 |||| || | ||| |||||| | | | |||| || | ||||| || |||| Sbjct 721905 ATCAATGCCCTGTCCAGAATAATCTGTCTTTATATCTTTGTACTTAGCTCCAAAGTGCCG 721964 Query 102058 CCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 ||| |||||||||||||| || || ||||| ||| Sbjct 721965 CCATTGAAATCCATACACTGGACCTAGATCACCT 721998 Score = 89.7 bits (98), Expect = 4e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 |||||||| || ||| || || | | ||| | |||| |||||| | ||| ||||| Sbjct 722268 CCTTCATCCCTATCAGTGAAGCCCATTGAATCAAGAAATTCTCTAGAACTATTACCATCC 722327 Query 102149 CAAATGTGCACGC-CAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCA 102207 |||||||| | | | | ||| || ||||| | || || |||| |||||||| Sbjct 722328 CAAATGTGAATGTTCTTGTCTTGA-AGTTCTTTAGCATTTGTTGAGCCTCGAATAAACCA 722386 Query 102208 CAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 || |||||||||||| ||| ||| ||| ||||||||||| || || | | ||||||| Sbjct 722387 CAGCAGTTCTTCAACTACAGCTCGCCAGAATACTCTCTTGGTGGTCAGTAATGGAAAT 722444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361142047046792