Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq714 132 6e-26
seq211 104 3e-17
>seq714
Length=734366
Score = 132 bits (146), Expect = 6e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||| ||| ||||||||| || | ||||| |||||||| ||||||| ||||| || ||
Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
|||||||| || ||||||||||| || || || | ||||||||| | |||| |||
Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868
Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574
| | | |||||||| || ||||| || |||||||| || || | ||| ||| |||
Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928
Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607
|||| |||| || ||| ||||| | |||
Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961
Score = 125 bits (138), Expect = 8e-24
Identities = 165/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| || || ||| ||||||||| || || | ||| ||||| || || | || |
Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| || || || ||||| || || |||||||| || || ||||| ||||| |
Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021
Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 24333
| | | ||| || ||||| || | |||| | ||||||| | |||||||| |
Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081
Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381
| |||||||||||||| |||||||| || ||||||||||| | |||||
Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129
>seq211
Length=1809889
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837
|||||| |||||||| || ||||| || | || |||||||| || ||||| ||||||||
Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951
Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897
||||| | ||| || || || ||| |||| || | ||| | |||||||| || ||
Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891
Query 54898 TGTTACTCCATTATATA 54914
|||||||||| |||||
Sbjct 904890 TGTTACTCCAGCATATA 904874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593537605676160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |