Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq783 138 1e-27
seq2315 120 3e-22
seq1551 98.7 9e-16
>seq783
Length=580412
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||||| ||| | |||| |||||| ||||| ||||||||||||||
Sbjct 390357 TACCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTG 390298
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || ||||||||||| || ||||| |||| | | ||| || || || |
Sbjct 390297 AAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGG 390238
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||| |||||||| |||||| ||| || | |||| || |||| |||||
Sbjct 390237 GAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGA 390178
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | ||||| ||||| |||||||||||||||||||||||
Sbjct 390177 CTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||| | ||||||||||| || || || || ||||||||||| || || || ||
Sbjct 391340 TCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCC 391281
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||| || || ||||| ||||| |||| |||||||||||||| ||||| |||||||||||
Sbjct 391280 ATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTT 391221
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
|| |||||| ||| || | ||||| ||||| | ||| || || | || |
Sbjct 391220 ATCCTGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGAT 391161
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| |||| ||| || || |||||||||||
Sbjct 391160 GGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| || || | || |||||| | || | |||||| ||||||||||||||||| ||| |
Sbjct 390127 CCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAC 390068
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || ||| || ||||| || || || |||| | | ||| || || || ||
Sbjct 390067 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390008
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
||||| ||||| || ||| || ||| || | ||||| ||||| | | ||| ||
Sbjct 390007 ATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACT 389948
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | |||||||| || ||||| || ||||||||||||||
Sbjct 389947 TCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608
|||| ||||| ||||| || || ||| | |||||| ||||| || ||||| |||
Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487
Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668
| | | ||| || || || || ||||| |||||||| ||| || |||||| | ||
Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTT 390427
Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728
||| ||||| | |||||| || | || | ||||| || || || ||||| || |
Sbjct 390426 CGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGA 390367
Query 118729 AAATCTGCAT 118738
||||||||||
Sbjct 390366 AAATCTGCAT 390357
>seq2315
Length=138946
Score = 120 bits (132), Expect = 3e-22
Identities = 145/193 (75%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTA 118606
||||||||||||| || || | | |||| |||| ||| || |||||||| || ||| |
Sbjct 26967 CTTTTTGAATGTTATAGTC--TGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAA 26910
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
|| | | ||||||||| ||||| || ||||| |||||| ||||||| ||| || |
Sbjct 26909 AATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATT 26850
Query 118667 TTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725
|| | ||| || | || | || ||||| | ||| | ||||| || || |||||||| |
Sbjct 26849 CTCAATGGTATCAGATGGT-TCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCA 26791
Query 118726 CAAAAATCTGCAT 118738
|||||||||||||
Sbjct 26790 CAAAAATCTGCAT 26778
Score = 111 bits (122), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587
||||| || | ||||||||||| ||||| |||||||| | | |||| ||| |||||
Sbjct 33201 ACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATC--TGAAAGTGTGCGACCATCCT 33144
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
|||||||||| ||||| | ||||| | |||||| || ||||| || |||||||| |||
Sbjct 33143 CGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCTT 33084
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707
||| ||| ||| || | || | ||| || | || || || | || | || |
Sbjct 33083 GAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCACTTCCAATGTAATTGTCT 33024
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| || |||| || || ||||| |||||||||
Sbjct 33023 TTCCTGTCAAGGTCTTCACAAAGATCTGCATG 32992
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608
||||||| ||||||||||| || ||||| |||||| ||||| || ||||| |||
Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261
Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668
| || | |||||||| ||||| || || ||||||||| || ||| ||| || | ||
Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201
Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727
| | || || | || | || || || | ||| | ||||| || |||| ||| || ||
Sbjct 27200 CAATTGTATCAGATGGT-TCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACG 27142
Query 118728 AAAATCTGCAT 118738
|| || |||||
Sbjct 27141 AAGATTTGCAT 27131
Score = 86.0 bits (94), Expect = 5e-12
Identities = 135/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608
||||||| || ||||| || || ||||| ||| || | |||||| || || | |
Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152
Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668
| | ||||||||||| || || || || || |||||| ||||||| || || | ||
Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATTTT 28092
Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727
| | ||| || | || | || ||||| | || | |||||||| || || || || |||
Sbjct 28091 CAATGGTATCAGATGGT-TCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACA 28033
Query 118728 AAAATCTGCAT 118738
|| ||||||||
Sbjct 28032 AATATCTGCAT 28022
>seq1551
Length=444118
Score = 98.7 bits (108), Expect = 9e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| ||||| ||||| |||| |||||||||||||| |||||||||||| |||| ||
Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
||||| ||| || | ||||| ||||| | ||| || || | || | ||||||
Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||| || || |||||||||||
Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433699317060064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |