Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq783 138 1e-27 seq2315 120 3e-22 seq1551 98.7 9e-16 >seq783 Length=580412 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||||| ||| | |||| |||||| ||||| |||||||||||||| Sbjct 390357 TACCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTG 390298 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||||||||| || ||||| |||| | | ||| || || || | Sbjct 390297 AAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGG 390238 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| |||||| ||| || | |||| || |||| ||||| Sbjct 390237 GAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGA 390178 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| ||||| ||||||||||||||||||||||| Sbjct 390177 CTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||| | ||||||||||| || || || || ||||||||||| || || || || Sbjct 391340 TCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCC 391281 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || || ||||| ||||| |||| |||||||||||||| ||||| ||||||||||| Sbjct 391280 ATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTT 391221 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || |||||| ||| || | ||||| ||||| | ||| || || | || | Sbjct 391220 ATCCTGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGAT 391161 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| |||| ||| || || ||||||||||| Sbjct 391160 GGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | || |||||| | || | |||||| ||||||||||||||||| ||| | Sbjct 390127 CCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAC 390068 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| || ||||| || || || |||| | | ||| || || || || Sbjct 390067 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390008 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| || ||| || ||| || | ||||| ||||| | | ||| || Sbjct 390007 ATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACT 389948 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||||| || ||||| || |||||||||||||| Sbjct 389947 TCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||| ||||| || || ||| | |||||| ||||| || ||||| ||| Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | | ||| || || || || ||||| |||||||| ||| || |||||| | || Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTT 390427 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||||| | |||||| || | || | ||||| || || || ||||| || | Sbjct 390426 CGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGA 390367 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 390366 AAATCTGCAT 390357 >seq2315 Length=138946 Score = 120 bits (132), Expect = 3e-22 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTA 118606 ||||||||||||| || || | | |||| |||| ||| || |||||||| || ||| | Sbjct 26967 CTTTTTGAATGTTATAGTC--TGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAA 26910 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 || | | ||||||||| ||||| || ||||| |||||| ||||||| ||| || | Sbjct 26909 AATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATT 26850 Query 118667 TTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 || | ||| || | || | || ||||| | ||| | ||||| || || |||||||| | Sbjct 26849 CTCAATGGTATCAGATGGT-TCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCA 26791 Query 118726 CAAAAATCTGCAT 118738 ||||||||||||| Sbjct 26790 CAAAAATCTGCAT 26778 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 ||||| || | ||||||||||| ||||| |||||||| | | |||| ||| ||||| Sbjct 33201 ACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATC--TGAAAGTGTGCGACCATCCT 33144 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 |||||||||| ||||| | ||||| | |||||| || ||||| || |||||||| ||| Sbjct 33143 CGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCTT 33084 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| ||| || | || | ||| || | || || || | || | || | Sbjct 33083 GAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCACTTCCAATGTAATTGTCT 33024 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || |||| || || ||||| ||||||||| Sbjct 33023 TTCCTGTCAAGGTCTTCACAAAGATCTGCATG 32992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||||||||| || ||||| |||||| ||||| || ||||| ||| Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | || | |||||||| ||||| || || ||||||||| || ||| ||| || | || Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 | | || || | || | || || || | ||| | ||||| || |||| ||| || || Sbjct 27200 CAATTGTATCAGATGGT-TCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACG 27142 Query 118728 AAAATCTGCAT 118738 || || ||||| Sbjct 27141 AAGATTTGCAT 27131 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| || ||||| || || ||||| ||| || | |||||| || || | | Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | ||||||||||| || || || || || |||||| ||||||| || || | || Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATTTT 28092 Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 | | ||| || | || | || ||||| | || | |||||||| || || || || ||| Sbjct 28091 CAATGGTATCAGATGGT-TCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACA 28033 Query 118728 AAAATCTGCAT 118738 || |||||||| Sbjct 28032 AATATCTGCAT 28022 >seq1551 Length=444118 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||| |||||||||||||| |||||||||||| |||| || Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||||| ||||| | ||| || || | || | |||||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || ||||||||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433699317060064