Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq39 158 2e-33 seq1206 122 1e-22 seq242 104 3e-17 seq3439 100 4e-16 seq783 100 4e-16 seq2315 98.7 1e-15 seq123 96.9 5e-15 >seq39 Length=3240425 Score = 158 bits (174), Expect = 2e-33 Identities = 146/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 95329 AAAATGTCACTTAATAATATATGTTATGAACACATTAAAGACTCATATTATTATGGTCTA 95388 || ||||| || || ||| ||||||||||||| || |||||| |||| |||||||| Sbjct 2060469 AACATGTCTCTCAACAATGTATGTTATGAACAAATCAAAGACCAGTATTGGTATGGTCTC 2060410 Query 95389 TTTGGTGATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTA 95448 ||||| |||||||| || ||||||||||| | || || ||||||||||||||||||||| Sbjct 2060409 TTTGGAGATTTTAATTTGGTTATAGATAAGTCGACTGGATGTTTTAATGCTACTAAATTA 2060350 Query 95449 TGTAATTTAGGTGGTAAACAATATAGAGATTGGAAACGTTTAGAAAAATCTAAAGAACTT 95508 ||| || || ||||||| || |||| | |||| || |||||||| ||| ||||| Sbjct 2060349 TGTCATAGTGGCGGTAAACGATTTAGAAACTGGATGCGATTAGAAAACAGCAAACAACTT 2060290 Query 95509 ATAAA 95513 || || Sbjct 2060289 ATCAA 2060285 Score = 150 bits (166), Expect = 3e-31 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 96449 AAAATGTCTTTAATTGATGTATGTTATGAACACATCAAAGACTCATATTATTATGGTTTA 96508 || |||||| | | |||||||||||||||| ||||||||| |||| |||||| | Sbjct 2060469 AACATGTCTCTCAACAATGTATGTTATGAACAAATCAAAGACCAGTATTGGTATGGTCTC 2060410 Query 96509 TTTGGTGATTTTAAATTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTA 96568 ||||| |||||||| || ||||||||||| | || || ||||||||||||||||||||| Sbjct 2060409 TTTGGAGATTTTAATTTGGTTATAGATAAGTCGACTGGATGTTTTAATGCTACTAAATTA 2060350 Query 96569 TGTAATTTATCAGGAAAAAGATTTAGAAATTGGATTAGATTAGATAGATCTAAACAA-TT 96627 ||| || || ||| |||||||||| ||||| ||||||| | |||||| || Sbjct 2060349 TGTCATAGTGGCGGTAAACGATTTAGAAACTGGATGCGATTAGAAAACAGCAAACAACTT 2060290 Query 96628 ATTAA--AATATATGGAGAATTACCGAAGCTCATATGTGAGC 96667 || || | |||| || || | | |||||| |||||||| Sbjct 2060289 ATCAAGTATTATAAAGAAAAATTAGGTAGCTCAGATGTGAGC 2060248 Score = 140 bits (154), Expect = 5e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25916 AAAATGTCTTTAATTGATGTGTGTTATGAACACATTAAAGACTCATATTATTATGGTCTC 25975 || |||||| | | |||| ||||||||||| || |||||| |||| ||||||||| Sbjct 2060469 AACATGTCTCTCAACAATGTATGTTATGAACAAATCAAAGACCAGTATTGGTATGGTCTC 2060410 Query 25976 TTTGGTGATTTTAAATTAGTTATAGATAAAACAACAGGTTGTTTTAATGCTACTAAGTTA 26035 ||||| |||||||| || ||||||||||| | || || ||||||||||||||||| ||| Sbjct 2060409 TTTGGAGATTTTAATTTGGTTATAGATAAGTCGACTGGATGTTTTAATGCTACTAAATTA 2060350 Query 26036 TGTAATTTAGGTGGTAAAAAATTTAAACAATGGAAACGTTTAGAAAA 26082 ||| || || |||||| ||||| | | |||| || |||||||| Sbjct 2060349 TGTCATAGTGGCGGTAAACGATTTAGAAACTGGATGCGATTAGAAAA 2060303 >seq1206 Length=549353 Score = 122 bits (134), Expect = 1e-22 Identities = 103/124 (83%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 95332 ATGTCACTTAATAATATATGTTATGAACACATTAAAGACTCA-TATTATTATGGTCTATT 95390 ||||| ||||||||| |||||||| |||| || ||||| ||| |||| |||||||| || Sbjct 366373 ATGTCTCTTAATAATTTATGTTATAAACAAATCAAAGA-TCAGTATTGGTATGGTCTCTT 366431 Query 95391 TGGTGATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTATG 95450 ||| | ||||| | || |||||||| |||| ||||||||||||||||| |||||||| Sbjct 366432 TGGAAAATTTAATCTGGTCATAGATAAGTCTACTGGTTGTTTTAATGCTACCAAATTATG 366491 Query 95451 TAAT 95454 |||| Sbjct 366492 TAAT 366495 Score = 104 bits (114), Expect = 3e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 96452 ATGTCTTTAATTGATGTATGTTATGAACACATCAAAGACTCA-TATTATTATGGTTTATT 96510 |||||| | | | || |||||||| |||| |||||||| ||| |||| |||||| | || Sbjct 366373 ATGTCTCTTAATAATTTATGTTATAAACAAATCAAAGA-TCAGTATTGGTATGGTCTCTT 366431 Query 96511 TGGTGATTTTAAATTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATG 96570 ||| | ||||| | || |||||||| | || ||||||||||||||||| |||||||| Sbjct 366432 TGGAAAATTTAATCTGGTCATAGATAAGTCTACTGGTTGTTTTAATGCTACCAAATTATG 366491 Query 96571 TAAT 96574 |||| Sbjct 366492 TAAT 366495 Score = 100 bits (110), Expect = 4e-16 Identities = 117/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 25892 TATAAATATAATTAAAAATTATATAAA--ATGTCTTTAATTGATGTGTGTTATGAACACA 25949 ||| |||| ||| ||| | | | ||| |||||| | | | || | |||||| |||| | Sbjct 366345 TATTAATA-AATCAAACACTTAACAAATCATGTCTCTTAATAATTTATGTTATAAACAAA 366403 Query 25950 TTAAAGACTCA-TATTATTATGGTCTCTTTGGTGATTTTAAATTAGTTATAGATAAAACA 26008 | ||||| ||| |||| |||||||||||||| | ||||| | || |||||||| | Sbjct 366404 TCAAAGA-TCAGTATTGGTATGGTCTCTTTGGAAAATTTAATCTGGTCATAGATAAGTCT 366462 Query 26009 ACAGGTTGTTTTAATGCTACTAAGTTATGTAAT 26041 || ||||||||||||||||| || ||||||||| Sbjct 366463 ACTGGTTGTTTTAATGCTACCAAATTATGTAAT 366495 >seq242 Length=1788442 Score = 104 bits (114), Expect = 3e-17 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| || || |||| | ||| |||| || |||||||||||||||||||| Sbjct 1569958 ATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAATCAATCTC 1569899 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| ||||| || ||||| || ||||| |||| Sbjct 1569898 TGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTA 1569839 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || ||| || || || || ||||||||||| ||||| ||||| | |||||| ||| Sbjct 1569838 TCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACGAATATCTGC 1569779 Query 146276 ATT 146278 ||| Sbjct 1569778 ATT 1569776 >seq3439 Length=31086 Score = 100 bits (110), Expect = 4e-16 Identities = 98/126 (78%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 25931 GATGTGTGTTATGAACACATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAA 25990 ||||| ||||||||||| || ||||| ||| | |||||||||||||| ||||||||| Sbjct 10599 GATGTATGTTATGAACAAATCAAAGATCAATACTGGTATGGTCTCTTTGGAGATTTTAAA 10540 Query 25991 TTAGTTATAGATAAAACAACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGT 26050 | || ||||||||| | || || | || |||||||| ||| ||||| | | |||| Sbjct 10539 CTGGTCATAGATAAATCTACTGGATACTTCAATGCTACGAAGCTATGTCA---GGCTGGT 10483 Query 26051 AAAAAA 26056 |||||| Sbjct 10482 AAAAAA 10477 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 95332 ATGTCACTTAATAATATATGTTATGAACACATTAAAGACTCATATTATTATGGTCTATTT 95391 || || ||||| || ||||||||||||| || ||||| ||| | |||||||| ||| Sbjct 10611 ATATCTCTTAACGATGTATGTTATGAACAAATCAAAGATCAATACTGGTATGGTCTCTTT 10552 Query 95392 GGTGATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTATGT 95451 || ||||||||| | || ||||||||| |||| || | || |||||||| || ||||| Sbjct 10551 GGAGATTTTAAACTGGTCATAGATAAATCTACTGGATACTTCAATGCTACGAAGCTATGT 10492 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 96464 GATGTATGTTATGAACACATCAAAGACTCATATTATTATGGTTTATTTGGTGATTTTAAA 96523 ||||||||||||||||| |||||||| ||| | |||||| | ||||| ||||||||| Sbjct 10599 GATGTATGTTATGAACAAATCAAAGATCAATACTGGTATGGTCTCTTTGGAGATTTTAAA 10540 Query 96524 TTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATGT 96571 | || ||||||||| | || || | || |||||||| || ||||| Sbjct 10539 CTGGTCATAGATAAATCTACTGGATACTTCAATGCTACGAAGCTATGT 10492 >seq783 Length=580412 Score = 100 bits (110), Expect = 4e-16 Identities = 136/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 |||||| || ||||| || ||||| | || || |||||||| |||||||| || ||||| Sbjct 387240 TATATTGTAGTCTGACAGCGTTCTTCCGTCTTCCAATTGTTTGCCAGCAAAGATTAATCT 387181 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGT 146214 || || || ||||||||||| ||||| ||||| || Sbjct 387180 CTGTTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCAATGGT 387121 Query 146215 ATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTG 146274 ||||||| ||| |||||||| ||||| ||||| ||||| | || || | ||| || || Sbjct 387120 ATCTGAAGCTTCAACTTCTAGGGTGATAGTTTTCCCTGTCAGGGTCTTCACGAAAATCTG 387061 Query 146275 CATTTTATTAGAAAAATA 146292 ||| | || ||||| || Sbjct 387060 CATCCTGTTTGAAAATTA 387043 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | || | ||| | ||||||||||| || || ||||||||| Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || || || | || || |||||||| |||||||| || || || || ||| Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 390235 ATGCCTTCCTTGTCCTG 390219 >seq2315 Length=138946 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | | |||||||| | |||||| ||||| ||||| ||||||||| Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAA 33160 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||||| ||||||||||| | ||| ||||| || ||||| Sbjct 33159 AGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGG 33100 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 33099 ATTCCCTCCTTATCTTG 33083 >seq123 Length=2135277 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 7/147 (5%) Strand=Plus/Minus Query 25916 AAAATGTCTTTAATTGATGTGTGTTATGAACACAT---TAAAGACTCATATTATTATGGT 25972 || |||||| | | | |||| ||||||||||| || |||| | ||| | |||||| Sbjct 576974 AACATGTCTCTGAATAATGTATGTTATGAACAAATCGTTAAACA---ATACTGGTATGGT 576918 Query 25973 CTCTTTGGTGATTTTAAATTAGTTATAGATAAAACAACAGGTTGTTTTAATGCTACTAAG 26032 |||||||| ||||| || | |||||||||||| | || || | ||| || || |||||| Sbjct 576917 CTCTTTGGAGATTTCAAGCTGGTTATAGATAAATCTACTGGATATTTCAACGCCACTAAG 576858 Query 26033 TTATGTAATTTAGGTGGTAAAAAATTT 26059 |||||||| ||||| ||| ||||| Sbjct 576857 TTATGTAAAGATGGTGG-AAAGAATTT 576832 Score = 96.9 bits (106), Expect = 5e-15 Identities = 99/128 (77%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 95329 AAAATGTCACTTAATAATATATGTTATGAACACAT---TAAAGACTCATATTATTATGGT 95385 || ||||| || |||||| ||||||||||||| || |||| | ||| | |||||| Sbjct 576974 AACATGTCTCTGAATAATGTATGTTATGAACAAATCGTTAAACA---ATACTGGTATGGT 576918 Query 95386 CTATTTGGTGATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAA 95445 || ||||| ||||| || | |||||||||||| |||| || | ||| || || ||||| Sbjct 576917 CTCTTTGGAGATTTCAAGCTGGTTATAGATAAATCTACTGGATATTTCAACGCCACTAAG 576858 Query 95446 TTATGTAA 95453 |||||||| Sbjct 576857 TTATGTAA 576850 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/128 (75%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 96449 AAAATGTCTTTAATTGATGTATGTTATGAACACATC---AAAGACTCATATTATTATGGT 96505 || |||||| | | | |||||||||||||||| ||| ||| | ||| | |||||| Sbjct 576974 AACATGTCTCTGAATAATGTATGTTATGAACAAATCGTTAAACA---ATACTGGTATGGT 576918 Query 96506 TTATTTGGTGATTTTAAATTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTAAA 96565 | ||||| ||||| || | |||||||||||| | || || | ||| || || ||||| Sbjct 576917 CTCTTTGGAGATTTCAAGCTGGTTATAGATAAATCTACTGGATATTTCAACGCCACTAAG 576858 Query 96566 TTATGTAA 96573 |||||||| Sbjct 576857 TTATGTAA 576850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743295981168640