Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq714 163 3e-35 >seq714 Length=734366 Score = 163 bits (180), Expect = 3e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| |||| |||||| |||||||| |||| ||| |||||||||||||||| || Sbjct 47739 TTTCTTTTGGATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACAT 47798 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | |||||||| || ||||| ||||| || ||||| ||||| | | ||||||||| | Sbjct 47799 TTTCCATTGCAATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGC 47858 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 || |||||| | | |||||| || || |||||||| |||||||| || ||||||| Sbjct 47859 TGAATCTTTCTACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTA 47918 Query 16668 TGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || |||| |||| | || || ||||||| ||||| Sbjct 47919 CGTGTGATATGAAATGCCTTTCATCATTTGTAAGTTTTTCCCAGT 47963 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16271 ATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 || || ||||| ||||| || | |||||||| ||||||| ||| || | ||| || | Sbjct 43916 ATCAATTCGTTGCTGAAA--GTCAATCCTGGCATAAGTCCTCTTTTCTTCAGCCAGAAAA 43973 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 | | ||||| || || ||||| ||||| || ||||| |||||||| |||| || || Sbjct 43974 TTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATGCTACCACTCTCT 44033 Query 16389 CACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAA 16448 | || || ||| | | | | || | ||||| | ||||||| |||||| | ||| | Sbjct 44034 CGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTGCTTTCTTTTTTA 44093 Query 16449 CACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 |||| ||| | || || |||||||||||||| Sbjct 44094 CACACGGCATTGTTTCAATAGCATTAAATAAATA 44127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462368667531200