Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq39 118 1e-21 >seq39 Length=3240425 Score = 118 bits (130), Expect = 1e-21 Identities = 135/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 145147 CTTTATAATATTCCATTAACttttttgat-ttttCTAACTTCGTCCAGTCTCTAAATCTT 145205 |||||||||| | || || || |||| | |||||||| | |||||| |||||||| | Sbjct 2060274 CTTTATAATACTTGAT-AAGTTGTTTGCTGTTTTCTAATCGCATCCAGTTTCTAAATCGT 2060332 Query 145206 TTTCCTCCACTATTGCATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTCGACTACG 145265 || || ||||||| ||||||||||| || ||||||||| | || ||| || | || Sbjct 2060333 TTACCGCCACTATGACATAATTTAGTAGCATTAAAACATCCAGTCGACTTATCTATAACC 2060392 Query 145266 AGCTTAAAATCTCCAAATAACCCATAATAAAAGTTAtttttgattttttCATAACAAAC 145324 | |||||||||||||| | ||||| || | | | |||||||| ||||||||| || Sbjct 2060393 AAATTAAAATCTCCAAAGAGACCATACCAATACTGGTCTTTGATTTGTTCATAACATAC 2060451 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 145962 TTTTCAAGCCGAGTCCACTGTCTAAATTGTTTACCTCCACTATTGCATAATTTAGTTGCG 146021 ||||| | || |||| | ||||||| ||||||| ||||||| ||||||||||| || Sbjct 2060303 TTTTCTAATCGCATCCAGTTTCTAAATCGTTTACCGCCACTATGACATAATTTAGTAGCA 2060362 Query 146022 TTAAAACATTCTGTGTTCTTGTCGACTACGAGCTTAAAATCTCTAAATAACCCATAATAA 146081 ||||||||| | || ||| || | || | |||||||||| ||| | ||||| || Sbjct 2060363 TTAAAACATCCAGTCGACTTATCTATAACCAAATTAAAATCTCCAAAGAGACCATACCAA 2060422 Query 146082 AAGTTATCTTTGATTTTTTCATAACA 146107 | | |||||||||| ||||||||| Sbjct 2060423 TACTGGTCTTTGATTTGTTCATAACA 2060448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679603725517440