Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq783 129 5e-25 seq714 109 5e-19 seq211 100 3e-16 seq1551 93.3 4e-14 seq2315 86.0 6e-12 >seq783 Length=580412 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| |||||||| ||||| | || ||||| | || Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| | ||| ||| ||||| ||| | || || || ||| Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 391244 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || || ||||| ||||| | ||||| | | | || || || || || Sbjct 391245 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGA-TGGACGAACCCTGTCTGACTACAA 391303 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || ||||| ||||| || |||| |||||||| ||||| || Sbjct 391304 CATTCAGAAGGAATCCACTCTCCACTTGGTGCTTAGACTCAGGGGTGG 391351 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || |||||||| ||||| | || ||||| | || Sbjct 389901 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTCA 389960 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | || ||| ||||||||| | || || ||||| Sbjct 389961 GACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCAA 390020 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA-CTATGAGCGATTATAA 31371 ||| | | || || || ||||| ||| | ||||| | | || | || ||| || || Sbjct 390021 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGA-TGGACGAACCCTGTCCGACTACAA 390079 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||||||| || |||||||| || Sbjct 390080 CATTCAAAAAGAATCTACACTTCATCTTGT 390109 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||| ||||| || || ||||| || || | || || || | || Sbjct 390129 ATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTCG 390188 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| ||||||||||||| | || || ||||| Sbjct 390189 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390248 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || |||||||| ||| | || ||| ||| | ||||| ||| Sbjct 390249 CAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAAC 390308 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| || || ||||| || || ||||| | || |||| Sbjct 390309 ATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGACTTCGTGGTGGTA 390357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 31187 TCAAACA---TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||||||| |||| |||||||| ||||| |||||||| ||||| |||||| | || ||| Sbjct 387049 TCAAACAGGATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTT 387108 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 ||| | || || | | || | || || | || ||||| || || | || Sbjct 387109 GAAGCTTCAGATACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCT 387168 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| ||| | |||| || ||||||||||| ||||||||| Sbjct 387169 CCAGACCAACAGAGATTAATCTTTGCTGGCAAACAATTGGAAGAC 387213 >seq714 Length=734366 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||| || |||| || |||||| | || || || || ||||| ||||| ||||| || Sbjct 47941 TGAAAGGCATTTCATATCACACGTACTTGCATTCTTTGCAGCATCAGATGGAATTGTAAA 47882 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 || || | || |||||||| |||||||| ||||| || || || ||||| || || Sbjct 47881 TGAAAACCTTGTAGAAAGATTCAGCCAAGAAGTACAAGTCACAGAAGCAAGATGTTTCTA 47822 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||| | || || ||||| || |||||||||||||| ||||| || ||||| Sbjct 47821 TGGCTTTCAAATTGCAATGGAAAATGTTCATTCAGAAATGTACAGTCTACTTATAGATAC 47762 Query 57848 GTA 57850 || Sbjct 47761 ATA 47759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 ||||||||| | |||||||| || ||||| ||| | |||| ||| |||||| | ||||| Sbjct 55296 AGAGAATCCAAGAAGATTTGTGATTTTTCCTATTCAGTATCAAGATATTTGGCAAATGTA 55237 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 |||||| || ||||| || || ||||| | ||||||||||| | || |||| Sbjct 55236 CAAAAAAGCTGAAGCCTCATTCTGGACAGCAGAAGAAGTAGATTTATCAAAGG 55184 >seq211 Length=1809889 Score = 100 bits (110), Expect = 3e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || ||||| || ||||||| || | | | ||| ||||| | |||| | || || ||| Sbjct 922622 ACCTGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAA 922563 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 |||||||||||||||| ||| ||||| || ||||| || ||||| || || | || | Sbjct 922562 GATTCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGCAAGAAGCAAA 922503 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC-GACCAGTCCCACAGATC 22638 ||||| | | || |||| || ||| |||| || ||| | |||||||||||| || Sbjct 922502 GAGTTGCGAACACCATGCTGTGCAATACGTTTCTTCAG-ATCAGCCCAGTCCCACAGGTC 922444 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTG 22671 | || || ||||| |||||| || || || Sbjct 922443 TGTTGGTGTGACATT---CCACATGTCATACTG 922414 >seq1551 Length=444118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| |||||||| ||||| | || ||||| | || Sbjct 25339 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 25280 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| | ||| ||| |||| ||| | || || || ||| Sbjct 25279 GACACAATCGAAAATGTAAAAGCCAAAATCCAGGATAAGGCGGGCATACCTCCAGATCAG 25220 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 |||||||| || || ||||| ||||| Sbjct 25219 CAGCGTCTTATCTTTGCTGGTAAACA 25194 >seq2315 Length=138946 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || ||||| |||||| | || || ||||| || Sbjct 27131 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATCT 27190 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| || ||| || ||| || ||||||||||| | || || || || Sbjct 27191 GATACAATTGAAAATGTAAAAGCAAAGA-TACAAGACAAGGAAGGTATTCCTCCTGATCA 27249 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || ||||| || ||| |||| || Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGA 27285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || ||||||||||| ||||| | || || ||||| || Sbjct 28022 ATGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCT 28081 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | ||| ||||| ||||| | || || || ||| Sbjct 28082 GATACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 28141 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| |||| || || ||||||||||||||||| Sbjct 28142 CAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGA 28176 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || ||||| ||||| ||||| | || || ||||| || Sbjct 28960 CATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATC 29019 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | |||| || || || ||| | | |||| ||||| | || || |||| Sbjct 29020 TGATACCATTGAAAATGTAAAGGCAAAGATTCAAG-ACAAAGAAGGAATCCCACCAGACC 29078 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||| |||| || || || |||||||||||||| Sbjct 29079 AGCAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGA 29115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445628256992640