Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq783 129 5e-25
seq714 109 5e-19
seq211 100 3e-16
seq1551 93.3 4e-14
seq2315 86.0 6e-12
>seq783
Length=580412
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| |||||| |||| |||||||| ||||| | || ||||| | ||
Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| || ||| | ||| ||| ||||| ||| | || || || |||
Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 391244
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || || ||||| ||||| | ||||| | | | || || || || ||
Sbjct 391245 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGA-TGGACGAACCCTGTCTGACTACAA 391303
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||| || ||||| ||||| || |||| |||||||| ||||| ||
Sbjct 391304 CATTCAGAAGGAATCCACTCTCCACTTGGTGCTTAGACTCAGGGGTGG 391351
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || |||||||| || |||||||| ||||| | || ||||| | ||
Sbjct 389901 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTCA 389960
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| |||||| | || ||| ||||||||| | || || |||||
Sbjct 389961 GACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCAA 390020
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA-CTATGAGCGATTATAA 31371
||| | | || || || ||||| ||| | ||||| | | || | || ||| || ||
Sbjct 390021 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGA-TGGACGAACCCTGTCCGACTACAA 390079
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||||||||||||||| || |||||||| ||
Sbjct 390080 CATTCAAAAAGAATCTACACTTCATCTTGT 390109
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| ||||| ||||| || || ||||| || || | || || || | ||
Sbjct 390129 ATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTCG 390188
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | |||||| | ||| ||||||||||||| | || || |||||
Sbjct 390189 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390248
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || |||||||| ||| | || ||| ||| | ||||| |||
Sbjct 390249 CAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAAC 390308
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| |||||||| || || ||||| || || ||||| | || ||||
Sbjct 390309 ATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGACTTCGTGGTGGTA 390357
Score = 84.2 bits (92), Expect = 2e-11
Identities = 118/165 (72%), Gaps = 3/165 (2%)
Strand=Plus/Plus
Query 31187 TCAAACA---TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243
||||||| |||| |||||||| ||||| |||||||| ||||| |||||| | || |||
Sbjct 387049 TCAAACAGGATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTT 387108
Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303
||| | || || | | || | || || | || ||||| || || | ||
Sbjct 387109 GAAGCTTCAGATACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCT 387168
Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|| ||||| ||| | |||| || ||||||||||| |||||||||
Sbjct 387169 CCAGACCAACAGAGATTAATCTTTGCTGGCAAACAATTGGAAGAC 387213
>seq714
Length=734366
Score = 109 bits (120), Expect = 5e-19
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727
||| || |||| || |||||| | || || || || ||||| ||||| ||||| ||
Sbjct 47941 TGAAAGGCATTTCATATCACACGTACTTGCATTCTTTGCAGCATCAGATGGAATTGTAAA 47882
Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787
|| || | || |||||||| |||||||| ||||| || || || ||||| || ||
Sbjct 47881 TGAAAACCTTGTAGAAAGATTCAGCCAAGAAGTACAAGTCACAGAAGCAAGATGTTTCTA 47822
Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847
|| |||||| | || || ||||| || |||||||||||||| ||||| || |||||
Sbjct 47821 TGGCTTTCAAATTGCAATGGAAAATGTTCATTCAGAAATGTACAGTCTACTTATAGATAC 47762
Query 57848 GTA 57850
||
Sbjct 47761 ATA 47759
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583
||||||||| | |||||||| || ||||| ||| | |||| ||| |||||| | |||||
Sbjct 55296 AGAGAATCCAAGAAGATTTGTGATTTTTCCTATTCAGTATCAAGATATTTGGCAAATGTA 55237
Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636
|||||| || ||||| || || ||||| | ||||||||||| | || ||||
Sbjct 55236 CAAAAAAGCTGAAGCCTCATTCTGGACAGCAGAAGAAGTAGATTTATCAAAGG 55184
>seq211
Length=1809889
Score = 100 bits (110), Expect = 3e-16
Identities = 152/213 (71%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519
|| ||||| || ||||||| || | | | ||| ||||| | |||| | || || |||
Sbjct 922622 ACCTGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAA 922563
Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579
|||||||||||||||| ||| ||||| || ||||| || ||||| || || | || |
Sbjct 922562 GATTCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGCAAGAAGCAAA 922503
Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC-GACCAGTCCCACAGATC 22638
||||| | | || |||| || ||| |||| || ||| | |||||||||||| ||
Sbjct 922502 GAGTTGCGAACACCATGCTGTGCAATACGTTTCTTCAG-ATCAGCCCAGTCCCACAGGTC 922444
Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTG 22671
| || || ||||| |||||| || || ||
Sbjct 922443 TGTTGGTGTGACATT---CCACATGTCATACTG 922414
>seq1551
Length=444118
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| |||||| |||| |||||||| ||||| | || ||||| | ||
Sbjct 25339 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 25280
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| || ||| | ||| ||| |||| ||| | || || || |||
Sbjct 25279 GACACAATCGAAAATGTAAAAGCCAAAATCCAGGATAAGGCGGGCATACCTCCAGATCAG 25220
Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338
|||||||| || || ||||| |||||
Sbjct 25219 CAGCGTCTTATCTTTGCTGGTAAACA 25194
>seq2315
Length=138946
Score = 86.0 bits (94), Expect = 6e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||| |||| || ||||| |||||| | || || ||||| ||
Sbjct 27131 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATCT 27190
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| || ||| || ||| || ||||||||||| | || || || ||
Sbjct 27191 GATACAATTGAAAATGTAAAAGCAAAGA-TACAAGACAAGGAAGGTATTCCTCCTGATCA 27249
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||| | || || || ||||| || ||| |||| ||
Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGA 27285
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || ||||||||||| ||||| | || || ||||| ||
Sbjct 28022 ATGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCT 28081
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || || | ||| ||||| ||||| | || || || |||
Sbjct 28082 GATACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 28141
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| |||| || || |||||||||||||||||
Sbjct 28142 CAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGA 28176
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| || ||||| ||||| ||||| | || || ||||| ||
Sbjct 28960 CATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATC 29019
Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|| | | |||| || || || ||| | | |||| ||||| | || || ||||
Sbjct 29020 TGATACCATTGAAAATGTAAAGGCAAAGATTCAAG-ACAAAGAAGGAATCCCACCAGACC 29078
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||| |||| || || || ||||||||||||||
Sbjct 29079 AGCAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGA 29115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445628256992640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |