Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq714 125 9e-24 seq211 104 3e-17 >seq714 Length=734366 Score = 125 bits (138), Expect = 9e-24 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||| |||||||| || || | ||| ||||| || || | || | Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || ||||| ||||| || || || ||||||||||| | Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33780 | | | |||||| ||||| || | |||| | ||||||| | |||||||| | Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 | |||||||||||||| ||||| ||||| || |||||||| | ||||| Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||| ||| ||| ||||| || | ||||| |||||||| ||||||| ||||| || || Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||| || ||||||||||| || || || | || |||||| | |||| ||| Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | | |||||||| || |||||||| |||||||| || || | ||| ||| ||| Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 |||| |||| || ||| ||||| | ||| Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 ||| || | || | |||| || |||||||| || || |||| || || | |||| Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | | || ||||| || || | | || || | ||| |||||||||| ||||||||| Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566 || | ||| |||| | ||||| | | || || ||| ||||| || | ||| Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 || || ||||| | |||||| ||||| || |||||||||| Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309 >seq211 Length=1809889 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 |||||| ||||| || || ||||| || || || ||||| || || ||||| |||||||| Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 ||||| | ||| || || || ||| |||| || || ||| | |||||||| || || Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891 Query 64136 TGTTACTCCATTATATA 64152 |||||||||| ||||| Sbjct 904890 TGTTACTCCAGCATATA 904874 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||| || || || || | |||| || ||||| || |||||||||||||| || | | Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 | || || || || ||||| ||||| | || ||| ||| | || | ||| | Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600 Query 63537 AT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 | ||| ||||| ||||| || || ||| |||||||| || ||| |||| | ||||| Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCAT 63625 |||||| || || ||||| || || |||| Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629622419525760