Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq714 125 9e-24
seq211 104 3e-17
>seq714
Length=734366
Score = 125 bits (138), Expect = 9e-24
Identities = 165/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| || || ||| |||||||| || || | ||| ||||| || || | || |
Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| || || ||||| || ||||| ||||| || || || ||||||||||| |
Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021
Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33780
| | | |||||| ||||| || | |||| | ||||||| | |||||||| |
Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081
Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828
| |||||||||||||| ||||| ||||| || |||||||| | |||||
Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129
Score = 123 bits (136), Expect = 3e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||| ||| ||| ||||| || | ||||| |||||||| ||||||| ||||| || ||
Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961
|| ||||| || ||||||||||| || || || | || |||||| | |||| |||
Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868
Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021
| | | |||||||| || |||||||| |||||||| || || | ||| ||| |||
Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928
Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054
|||| |||| || ||| ||||| | |||
Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961
Score = 86.0 bits (94), Expect = 8e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446
||| || | || | |||| || |||||||| || || |||| || || | ||||
Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149
Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506
| | || ||||| || || | | || || | ||| |||||||||| |||||||||
Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209
Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566
|| | ||| |||| | ||||| | | || || ||| ||||| || | |||
Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269
Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606
|| || ||||| | |||||| ||||| || ||||||||||
Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309
>seq211
Length=1809889
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075
|||||| ||||| || || ||||| || || || ||||| || || ||||| ||||||||
Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951
Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135
||||| | ||| || || || ||| |||| || || ||| | |||||||| || ||
Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891
Query 64136 TGTTACTCCATTATATA 64152
|||||||||| |||||
Sbjct 904890 TGTTACTCCAGCATATA 904874
Score = 93.3 bits (102), Expect = 5e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476
||||| || || || || | |||| || ||||| || |||||||||||||| || | |
Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660
Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536
| || || || || ||||| ||||| | || ||| ||| | || | ||| |
Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600
Query 63537 AT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595
| ||| ||||| ||||| || || ||| |||||||| || ||| |||| | |||||
Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541
Query 63596 ATAGATGCCTTCTATGCTATCATCGATCAT 63625
|||||| || || ||||| || || ||||
Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629622419525760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |