Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq714 141 9e-29 >seq714 Length=734366 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | |||||||||||| | || ||| |||||||||||||||| ||||||||| || Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 |||||||| ||||||||||||| ||| |||| ||||| || |||||||| Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | || ||||||||||| ||||| | |||||| ||||| |||| ||| ||| Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 || | |||| || || || | ||| ||||| Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961 Score = 122 bits (134), Expect = 8e-23 Identities = 145/196 (74%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || ||||| ||||| | ||||| ||| || | ||| || || | |||||| || Sbjct 43931 AAAGTCAATCCTGGCATAAGTCCTCTTTTCTTCAGCCAGAAAATTGAAGCAAAGCTCCCG 43990 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTG 11797 || ||||| || |||||||| || ||||||||||| ||||| || |||||| | | Sbjct 43991 GAGAAGAAAATACCCTCCACTGCAGCAAATGCTACCACTCTCTCGCCATATGTTGCAGTA 44050 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 | | | ||||| | ||||||||| |||||||||||||| || ||||||||| Sbjct 44051 TCATTTGCAATCCACTGAAGGGCCCAATCTGCTTTCTTTTTTACACACGGCATTGTTTCA 44110 Query 11858 ATAGCGTTAAATAAAT 11873 ||||| |||||||||| Sbjct 44111 ATAGCATTAAATAAAT 44126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468379604164480