Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq714 134 2e-26 seq211 104 3e-17 >seq714 Length=734366 Score = 134 bits (148), Expect = 2e-26 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || || ||| ||||||||| || || | ||| ||||| || || | || | Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || || |||||||| || || ||||| ||||| | Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 36356 | | | |||||| ||||| ||| | |||| | ||||||| | |||||||| | Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404 | |||||||||||||| |||||||| || ||||||||||| | ||||| Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||| ||| ||||||||| || | ||||| |||||||| ||||||| ||||| || || Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||||||| || ||||||||||| || || || | ||||||||| | |||| ||| Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 | | | |||||||| || ||||| || |||||||| || || | ||| ||| ||| Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 |||| |||| | ||| ||||| | ||| Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 35963 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATC 36022 ||| || | || | |||| || |||||||| || ||||||| || || | |||| Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149 Query 36023 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 36082 | | || ||||| || || | | || || | ||| |||||||||| ||||||||| Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209 Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAA 36142 |||| || || || | ||||| | | ||| || ||| ||||| | | ||| Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269 Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 || || ||||| | |||||| ||||| || || ||||||| Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309 >seq211 Length=1809889 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 |||||| |||||||| || ||||| || | || |||||||| || | ||| |||||||| Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 ||||| | ||| || || || ||| |||| || || ||| | |||||||| || || Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891 Query 66929 TGTTACTCCATTATATA 66945 |||||||||| ||||| Sbjct 904890 TGTTACTCCAGCATATA 904874 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 ||||| || || || || | |||| || ||||| || |||||||||||||| || | | Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 | ||||| || | ||||| || || | || ||| ||| | || | ||| | Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600 Query 66330 A-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 | ||| ||||| ||||| || || ||| |||||||| || ||| |||| | || || Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541 Query 66389 ATAGATGCCCTCTATACTATCATCCATCAT 66418 |||||| ||||| || || || || |||| Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657968832249280